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The map label for this gene is algH [C]

Identifier: 28199162

GI number: 28199162

Start: 1487577

End: 1488143

Strand: Reverse

Name: algH [C]

Synonym: PD1276

Alternate gene names: 28199162

Gene position: 1488143-1487577 (Counterclockwise)

Preceding gene: 28199163

Following gene: 28199161

Centisome position: 59.06

GC content: 55.2

Gene sequence:

>567_bases
ATGTCCATGCCGACTATGACCTTAGTCAATCAATTGTTGATTGCGTTGCCGTCGATGCCGGATCCGCATTTCGCGCGCGG
CGTCGCGTTGATCTGCCAGCATGACAGCAATGGGGCAATGGGGGTGGTGCTTAATCGGCCCTCTGAATACACGCTTGGTG
AGGTGTTATTTCAAATGGGGATTGAAACCGCTTCTGAGACACTGCGGGAACAGGTGGTGTTGGCGGGTGGCCCAGTGCAT
CCAGACCGTGGTTTTGTCATTTATGACAGCGAACATGTGTGGGGTCCAAGTCTGCTGATTGGCGATGGTTTGTATCTGAC
CACCTCGCGTGACGTCCTTGCAGCAATGGCGGAAGGCTCTGGTCCTTCCCGTGCTTTGGTGGCGCTTGGTTGTGCGGGTT
GGGCTGCCGGACAACTGGAGTTGGAGTTGGTCGAAAATAATTGGTTGATGGTGCCGGCTGATGCCTCATTGCTGTTTGAT
ACTGCGCTAGAGCAGCGTTGGCAGCGTGCGGCTGGACGCATTGGCGTGGATTTGTTTCGGTTGACAGACTATACCGGGCA
TGCCTGA

Upstream 100 bases:

>100_bases
GAGATCAGTATCTGATGTGTGTAGGCATAAAAATCAGTGTGAGTAAGATGCGGAATGATTTTCTGAGGCACTGCTGCGGC
AAGAACGATAGAATGCGCTC

Downstream 100 bases:

>100_bases
GGCATCCTCCCCCTTCCCCGATGGTATTGTGCTTGGATTTGATGTCGGCACACGTCGGATTGGCGTAGCTGTGGGTAGCG
CCTTGGGGGCTGGCGCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEYTLGEVLFQMGIETASETLREQVVLAGGPVH
PDRGFVIYDSEHVWGPSLLIGDGLYLTTSRDVLAAMAEGSGPSRALVALGCAGWAAGQLELELVENNWLMVPADASLLFD
TALEQRWQRAAGRIGVDLFRLTDYTGHA

Sequences:

>Translated_188_residues
MSMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEYTLGEVLFQMGIETASETLREQVVLAGGPVH
PDRGFVIYDSEHVWGPSLLIGDGLYLTTSRDVLAAMAEGSGPSRALVALGCAGWAAGQLELELVENNWLMVPADASLLFD
TALEQRWQRAAGRIGVDLFRLTDYTGHA
>Mature_187_residues
SMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEYTLGEVLFQMGIETASETLREQVVLAGGPVHP
DRGFVIYDSEHVWGPSLLIGDGLYLTTSRDVLAAMAEGSGPSRALVALGCAGWAAGQLELELVENNWLMVPADASLLFDT
ALEQRWQRAAGRIGVDLFRLTDYTGHA

Specific function: Unknown

COG id: COG1678

COG function: function code K; Putative transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0301 (AlgH) family

Homologues:

Organism=Escherichia coli, GI87082187, Length=187, Percent_Identity=42.7807486631016, Blast_Score=157, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1276_XYLFT (Q87C20)

Other databases:

- EMBL:   AE009442
- RefSeq:   NP_779476.1
- ProteinModelPortal:   Q87C20
- SMR:   Q87C20
- STRING:   Q87C20
- GeneID:   1143998
- GenomeReviews:   AE009442_GR
- KEGG:   xft:PD1276
- eggNOG:   COG1678
- HOGENOM:   HBG530212
- OMA:   LIAMPGM
- ProtClustDB:   PRK00228
- BioCyc:   XFAS183190:PD_1276-MONOMER
- HAMAP:   MF_00758
- InterPro:   IPR003774

Pfam domain/function: PF02622 DUF179

EC number: NA

Molecular weight: Translated: 20247; Mature: 20116

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEYTLGEVLFQMG
CCCCHHHHHHHHHHHCCCCCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
IETASETLREQVVLAGGPVHPDRGFVIYDSEHVWGPSLLIGDGLYLTTSRDVLAAMAEGS
HHHHHHHHHHEEEEECCCCCCCCCEEEECCCCCCCCEEEEECCEEEEECHHHHHHHHCCC
GPSRALVALGCAGWAAGQLELELVENNWLMVPADASLLFDTALEQRWQRAAGRIGVDLFR
CCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE
LTDYTGHA
ECCCCCCC
>Mature Secondary Structure 
SMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEYTLGEVLFQMG
CCCHHHHHHHHHHHCCCCCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
IETASETLREQVVLAGGPVHPDRGFVIYDSEHVWGPSLLIGDGLYLTTSRDVLAAMAEGS
HHHHHHHHHHEEEEECCCCCCCCCEEEECCCCCCCCEEEEECCEEEEECHHHHHHHHCCC
GPSRALVALGCAGWAAGQLELELVENNWLMVPADASLLFDTALEQRWQRAAGRIGVDLFR
CCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE
LTDYTGHA
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12533478