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The map label for this gene is yqgF [C]

Identifier: 28199161

GI number: 28199161

Start: 1487117

End: 1487584

Strand: Reverse

Name: yqgF [C]

Synonym: PD1275

Alternate gene names: 28199161

Gene position: 1487584-1487117 (Counterclockwise)

Preceding gene: 28199162

Following gene: 28199160

Centisome position: 59.04

GC content: 59.4

Gene sequence:

>468_bases
ATGCCTGAGGCATCCTCCCCCTTCCCCGATGGTATTGTGCTTGGATTTGATGTCGGCACACGTCGGATTGGCGTAGCTGT
GGGTAGCGCCTTGGGGGCTGGCGCGCGTGCGGTGGCGGTGATTGATGTGCATGGTGTGGCCGTGGACTGGAATGCCCTGG
ATCGTGTGAAGCGCAATTGGCTGCCTGTTGGTTTGGTGGTCGGTGATCCGCTCACCTTGGAAGGCCATGACCAGCCGATC
CGTAAACAAGCCCATGCGTTTGCGTGTCAGTTACGTGAGCGCTATCGATTACCTGTGGTACTGGTTGACGAGCGTTCCAG
TTCAGTTGAAGCCGCAAGCCGTTTCGCTGGTGCCCGTGCAGCTGGGTACAAGCGCCGCCGCGATGCTGACACCCTGGATG
CGATAGCGGCCGCAGTCATCCTTGAGCGTTGGCTTGCCGATCCTATGCAGGCGACATCACTTCCTTGA

Upstream 100 bases:

>100_bases
GATGCCTCATTGCTGTTTGATACTGCGCTAGAGCAGCGTTGGCAGCGTGCGGCTGGACGCATTGGCGTGGATTTGTTTCG
GTTGACAGACTATACCGGGC

Downstream 100 bases:

>100_bases
TTTTTTGAACCTTAAAGCGATCACTCTTATGCAATTTGATTCAAATGGACGTTTGCGTCACCTGCTCACTTTGGAAGGAC
TGTCGCGTCACACACTGCTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPEASSPFPDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVGDPLTLEGHDQPI
RKQAHAFACQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRRDADTLDAIAAAVILERWLADPMQATSLP

Sequences:

>Translated_155_residues
MPEASSPFPDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVGDPLTLEGHDQPI
RKQAHAFACQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRRDADTLDAIAAAVILERWLADPMQATSLP
>Mature_154_residues
PEASSPFPDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVGDPLTLEGHDQPIR
KQAHAFACQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRRDADTLDAIAAAVILERWLADPMQATSLP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=37.037037037037, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_XYLF2 (B2I5Y9)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830052.1
- ProteinModelPortal:   B2I5Y9
- SMR:   B2I5Y9
- GeneID:   6202245
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1360
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16590; Mature: 16459

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEASSPFPDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNW
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCEEECHHHHHHHHHCC
LPVGLVVGDPLTLEGHDQPIRKQAHAFACQLRERYRLPVVLVDERSSSVEAASRFAGARA
CEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCHHH
AGYKRRRDADTLDAIAAAVILERWLADPMQATSLP
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
PEASSPFPDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNW
CCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCEEECHHHHHHHHHCC
LPVGLVVGDPLTLEGHDQPIRKQAHAFACQLRERYRLPVVLVDERSSSVEAASRFAGARA
CEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCHHH
AGYKRRRDADTLDAIAAAVILERWLADPMQATSLP
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA