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The map label for this gene is oppC [H]

Identifier: 23100067

GI number: 23100067

Start: 2674602

End: 2675492

Strand: Reverse

Name: oppC [H]

Synonym: OB2612

Alternate gene names: 23100067

Gene position: 2675492-2674602 (Counterclockwise)

Preceding gene: 23100068

Following gene: 23100066

Centisome position: 73.69

GC content: 33.78

Gene sequence:

>891_bases
ATGGAGATAAATTCGAAGGTTGTTGAACAAAGGAGTCCTTCCGCGTTAAGAATACTTATTAAAGAACTTTATAGAGATAA
ATTAGCTCTTGTTTCTTTAATATTTTTATTAGGTACAATGCTATTTGTATTTGGCACTTCGCTTATATTAGACCAAAAAG
AGATTGTAAGTGTTGATTTGTTTGCCATACATGAAGCCCCATCTGATCAATTTATATTAGGTACAGATTATGGCGGGCGA
GATGTATTCGGTCAATTAATCATTGGAACTAGAAACTCATTAGCGATTGGGATCATGGTTACGTTGTTTAGTGGTGCTTT
TGGAATTATTTACGGTGTAGTTTCTGGATATTTTGGTGGCCATATCGATAACATTATGATGCGTATTTTAGATTTCTTTA
ACGTATTACCATTCTTAATGATTATTATTGTTTTCGTGGCAATTGTTCCTAGCTACAATACGTTAACTTTCTCTATTATT
ATGGCTGCATTTTCATGGATGGGGATAGCCAGATTAATACGATCAAAGGCTTTGCAAGAAAAAGAATTGGATTATGCACA
AGCATCCAAAACATTAGGAACATCAAATTTAAAAATAATCTTTAATCAAGTGTTACCTAATATTACCTCGTTAATTATTG
TAACGATGACGTTAAACTTAGCTTCTAATATTGGATTGGAATCTGGACTTTCATTTTTAGGATTTGGTTTTCCAGAGAAT
ACTCCTAGTTTGGGTACATTATTAAGTTATGCTAGAAATCCACAAACACTTGAATTTCGCTGGTGGATTTGGATACCTGC
AGCAATATTGATTCTGTTATTAATGCTTTCAGTAAGAAATGTTGGAGAGGCTTTAAGACGTGCTGCAGACGCAAAACAGC
GTCGAGGTTAA

Upstream 100 bases:

>100_bases
TAATATTTTAGGGGCATTACTTTCTGACATTATTTTAAGTATCGTTGATCCACGTATTCGTATTAAATAGAAACAGCATA
TGTTTTGAGGTGAATATTAC

Downstream 100 bases:

>100_bases
GAAATATTTTGGTACCTACATCAAAATTGATGTTGAGTATATAAGCCGGTAGTCCTTGCTGGCAAGACAGAAACAATAAC
AAAGGGAGGTTACAAGGATG

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MEINSKVVEQRSPSALRILIKELYRDKLALVSLIFLLGTMLFVFGTSLILDQKEIVSVDLFAIHEAPSDQFILGTDYGGR
DVFGQLIIGTRNSLAIGIMVTLFSGAFGIIYGVVSGYFGGHIDNIMMRILDFFNVLPFLMIIIVFVAIVPSYNTLTFSII
MAAFSWMGIARLIRSKALQEKELDYAQASKTLGTSNLKIIFNQVLPNITSLIIVTMTLNLASNIGLESGLSFLGFGFPEN
TPSLGTLLSYARNPQTLEFRWWIWIPAAILILLLMLSVRNVGEALRRAADAKQRRG

Sequences:

>Translated_296_residues
MEINSKVVEQRSPSALRILIKELYRDKLALVSLIFLLGTMLFVFGTSLILDQKEIVSVDLFAIHEAPSDQFILGTDYGGR
DVFGQLIIGTRNSLAIGIMVTLFSGAFGIIYGVVSGYFGGHIDNIMMRILDFFNVLPFLMIIIVFVAIVPSYNTLTFSII
MAAFSWMGIARLIRSKALQEKELDYAQASKTLGTSNLKIIFNQVLPNITSLIIVTMTLNLASNIGLESGLSFLGFGFPEN
TPSLGTLLSYARNPQTLEFRWWIWIPAAILILLLMLSVRNVGEALRRAADAKQRRG
>Mature_296_residues
MEINSKVVEQRSPSALRILIKELYRDKLALVSLIFLLGTMLFVFGTSLILDQKEIVSVDLFAIHEAPSDQFILGTDYGGR
DVFGQLIIGTRNSLAIGIMVTLFSGAFGIIYGVVSGYFGGHIDNIMMRILDFFNVLPFLMIIIVFVAIVPSYNTLTFSII
MAAFSWMGIARLIRSKALQEKELDYAQASKTLGTSNLKIIFNQVLPNITSLIIVTMTLNLASNIGLESGLSFLGFGFPEN
TPSLGTLLSYARNPQTLEFRWWIWIPAAILILLLMLSVRNVGEALRRAADAKQRRG

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788505, Length=230, Percent_Identity=33.9130434782609, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787054, Length=285, Percent_Identity=27.719298245614, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787498, Length=301, Percent_Identity=32.2259136212625, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1787760, Length=264, Percent_Identity=30.6818181818182, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789964, Length=235, Percent_Identity=35.7446808510638, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787549, Length=301, Percent_Identity=29.2358803986711, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=28.75, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32835; Mature: 32835

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINSKVVEQRSPSALRILIKELYRDKLALVSLIFLLGTMLFVFGTSLILDQKEIVSVDL
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHH
FAIHEAPSDQFILGTDYGGRDVFGQLIIGTRNSLAIGIMVTLFSGAFGIIYGVVSGYFGG
HEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
HIDNIMMRILDFFNVLPFLMIIIVFVAIVPSYNTLTFSIIMAAFSWMGIARLIRSKALQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELDYAQASKTLGTSNLKIIFNQVLPNITSLIIVTMTLNLASNIGLESGLSFLGFGFPEN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCC
TPSLGTLLSYARNPQTLEFRWWIWIPAAILILLLMLSVRNVGEALRRAADAKQRRG
CCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEINSKVVEQRSPSALRILIKELYRDKLALVSLIFLLGTMLFVFGTSLILDQKEIVSVDL
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHH
FAIHEAPSDQFILGTDYGGRDVFGQLIIGTRNSLAIGIMVTLFSGAFGIIYGVVSGYFGG
HEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
HIDNIMMRILDFFNVLPFLMIIIVFVAIVPSYNTLTFSIIMAAFSWMGIARLIRSKALQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELDYAQASKTLGTSNLKIIFNQVLPNITSLIIVTMTLNLASNIGLESGLSFLGFGFPEN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCC
TPSLGTLLSYARNPQTLEFRWWIWIPAAILILLLMLSVRNVGEALRRAADAKQRRG
CCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]