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The map label for this gene is oppB [H]

Identifier: 23100068

GI number: 23100068

Start: 2675523

End: 2676485

Strand: Reverse

Name: oppB [H]

Synonym: OB2613

Alternate gene names: 23100068

Gene position: 2676485-2675523 (Counterclockwise)

Preceding gene: 23100069

Following gene: 23100067

Centisome position: 73.72

GC content: 32.92

Gene sequence:

>963_bases
ATGTGGAAATTTATAGTTCGAAGATTAGTAATCACTTTTCCCCAAGTACTATTTTTGAGTATTTTAGTATTTTTATTAGC
ACAGCTAATGCCAGGTGATGCATTAACTGGATTGATAGATCCAAATATTGATAGAGCAACTATTGATGAATTAAGAGAGA
AAATGGGATTGAATAACCCTTGGTATGTACAATATGGAGATTGGTTAGGTGGAGCAGTACAGGGAGATTTTGGGCAATCA
TTTAGATTTAAAATGCCGGTTACAGAATTAATATCACAACGAATGGAAAATACAGTGTTGCTTTCCATCGTAACATTAAT
TTTTACATACCTAATTGCTATTCCACTTGGTATTACTAGTGGAAGATTTAACGATACAGTTCTTGATCAAAGTATAACTG
GATATACTTATTTAGGTTTTGCAACTCCATTATTTATTTTTGGTTTAGTTATGTTATGGGTTTTTGGATATCAATTAGGT
TGGTTCCCGACTAGTGGAAGTGTTGAGCCTGGGTTAGAGCGAGGGACGATGGAATATGCGATAAGTAAATTATATCATCT
CATTTTACCAGGACTTTCTATGGCGTTAATACAAGTTGTATCGACGGTACAATACTTAAGAAGTGAAATTGTGGATACAA
AGCAAAAAGATTTTATAGTTACAGCAAGATCTAAAGGTGCATCGGAAAGTAGAGTATACAACAAACATATTTTTAGAAAT
TCATTATTACCTATCGCAGCTTTCTTTGGATGGGAGATAACCACTTTAATTTCTGGAACAATATTTATTGAAAATATTTT
TGGATTCCCAGGAATGGGTGCACTATTTTTAGAGTCAATTACTCAGCGTGACTATAGTGTAGTAACTTCCTTAGTTTTAT
TGTTTGGTATTGCTAATATTTTAGGGGCATTACTTTCTGACATTATTTTAAGTATCGTTGATCCACGTATTCGTATTAAA
TAG

Upstream 100 bases:

>100_bases
TCTTTTAATGATTACTTTGATCAGCAAGGATTAGCTTATAAATTGCAATCAATTTCGGATTCACATAGAGTCGCGCTACC
GCAGAAAGGTTGATTTATAC

Downstream 100 bases:

>100_bases
AAACAGCATATGTTTTGAGGTGAATATTACATGGAGATAAATTCGAAGGTTGTTGAACAAAGGAGTCCTTCCGCGTTAAG
AATACTTATTAAAGAACTTT

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MWKFIVRRLVITFPQVLFLSILVFLLAQLMPGDALTGLIDPNIDRATIDELREKMGLNNPWYVQYGDWLGGAVQGDFGQS
FRFKMPVTELISQRMENTVLLSIVTLIFTYLIAIPLGITSGRFNDTVLDQSITGYTYLGFATPLFIFGLVMLWVFGYQLG
WFPTSGSVEPGLERGTMEYAISKLYHLILPGLSMALIQVVSTVQYLRSEIVDTKQKDFIVTARSKGASESRVYNKHIFRN
SLLPIAAFFGWEITTLISGTIFIENIFGFPGMGALFLESITQRDYSVVTSLVLLFGIANILGALLSDIILSIVDPRIRIK

Sequences:

>Translated_320_residues
MWKFIVRRLVITFPQVLFLSILVFLLAQLMPGDALTGLIDPNIDRATIDELREKMGLNNPWYVQYGDWLGGAVQGDFGQS
FRFKMPVTELISQRMENTVLLSIVTLIFTYLIAIPLGITSGRFNDTVLDQSITGYTYLGFATPLFIFGLVMLWVFGYQLG
WFPTSGSVEPGLERGTMEYAISKLYHLILPGLSMALIQVVSTVQYLRSEIVDTKQKDFIVTARSKGASESRVYNKHIFRN
SLLPIAAFFGWEITTLISGTIFIENIFGFPGMGALFLESITQRDYSVVTSLVLLFGIANILGALLSDIILSIVDPRIRIK
>Mature_320_residues
MWKFIVRRLVITFPQVLFLSILVFLLAQLMPGDALTGLIDPNIDRATIDELREKMGLNNPWYVQYGDWLGGAVQGDFGQS
FRFKMPVTELISQRMENTVLLSIVTLIFTYLIAIPLGITSGRFNDTVLDQSITGYTYLGFATPLFIFGLVMLWVFGYQLG
WFPTSGSVEPGLERGTMEYAISKLYHLILPGLSMALIQVVSTVQYLRSEIVDTKQKDFIVTARSKGASESRVYNKHIFRN
SLLPIAAFFGWEITTLISGTIFIENIFGFPGMGALFLESITQRDYSVVTSLVLLFGIANILGALLSDIILSIVDPRIRIK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=30.9375, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=29.3255131964809, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1789888, Length=321, Percent_Identity=31.1526479750779, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=28.2131661442006, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=27.2980501392758, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=28.343949044586, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=23.7735849056604, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35880; Mature: 35880

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKFIVRRLVITFPQVLFLSILVFLLAQLMPGDALTGLIDPNIDRATIDELREKMGLNNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCC
WYVQYGDWLGGAVQGDFGQSFRFKMPVTELISQRMENTVLLSIVTLIFTYLIAIPLGITS
EEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GRFNDTVLDQSITGYTYLGFATPLFIFGLVMLWVFGYQLGWFPTSGSVEPGLERGTMEYA
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
ISKLYHLILPGLSMALIQVVSTVQYLRSEIVDTKQKDFIVTARSKGASESRVYNKHIFRN
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
SLLPIAAFFGWEITTLISGTIFIENIFGFPGMGALFLESITQRDYSVVTSLVLLFGIANI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGALLSDIILSIVDPRIRIK
HHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MWKFIVRRLVITFPQVLFLSILVFLLAQLMPGDALTGLIDPNIDRATIDELREKMGLNNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCC
WYVQYGDWLGGAVQGDFGQSFRFKMPVTELISQRMENTVLLSIVTLIFTYLIAIPLGITS
EEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GRFNDTVLDQSITGYTYLGFATPLFIFGLVMLWVFGYQLGWFPTSGSVEPGLERGTMEYA
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
ISKLYHLILPGLSMALIQVVSTVQYLRSEIVDTKQKDFIVTARSKGASESRVYNKHIFRN
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
SLLPIAAFFGWEITTLISGTIFIENIFGFPGMGALFLESITQRDYSVVTSLVLLFGIANI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGALLSDIILSIVDPRIRIK
HHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]