| Definition | Oceanobacillus iheyensis HTE831, complete genome. |
|---|---|
| Accession | NC_004193 |
| Length | 3,630,528 |
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The map label for this gene is polX [H]
Identifier: 23099580
GI number: 23099580
Start: 2159970
End: 2161688
Strand: Reverse
Name: polX [H]
Synonym: OB2125
Alternate gene names: 23099580
Gene position: 2161688-2159970 (Counterclockwise)
Preceding gene: 23099581
Following gene: 23099579
Centisome position: 59.54
GC content: 35.37
Gene sequence:
>1719_bases ATGAGTATTAATAAAAAAGATATCATAAAATTATTAGAAAAAATAGCTGTTTATTTAGAATTAAAGGGAGAGAACCCATT TAAAATTTCTGCGTATCGTAAGGCAGCGCAGGCATTAGAGACAGATGATAGGAGCTTAAGTGAAATGGGGGATTTCACTA AGATTAAAGGTATAGGAAAAGGGACAAGCGTTGTTATTGAGCAGTTCATCCAAGATGGTTATTCAGAGACGTTAAACGAT TTATCAAAAGAAGTACCACCTGGTTTACTTCCTTTATTAGATTTACCAGGATTAGGTGGTAAAAAGTTATCCAAGTTATA TCAGGAGTTACAGGTTGTAGATGCTAACAGTTTAAAAGAAGCTTGTCTTACAGGAAAAGTAGAAGCCTTATCAGGGTTTG GTAAGAAATCTGCAGAGAAGATTGTAAAAGCTCTGGATGAAGTCGGCAAGCGACCAGATCGGTTGCCGATTGCTACTATG TTACCTTTAGCGGAAAAGATAGTCGGATATTTAGAAGAAATGGATGGGATAATCCGTTTTTCGCAAGCCGGAAGTATTCG TAGGATGAAAGAATCCATCAAAGATTTAGATTTTATAATAGCTACCGAAAACACAGAGCGTGTTCGAGCTAATCTATTAG ATTTACCACAAATTAAAGAAATTATTGCCAATGGAGATACAAAAGTATCTGTAACGATTGAAGATGTGTATGATATCAAT GTTGACTTTAGATTAGTGCAAGATAAAGAATTTCCAACTACATTACATCATTTTACAGGTTCAAAAGATCATAATGTCGC AATGCGTCAGCTAGCAAAAGCTCGTGGTGAAAAAATTAGTGAGTATGGTGTAGAAGTAGAAGAAACGGGGGAACTTATTA CATTTGAAACAGAAACTGAATTTTTTAATCATTTTGGATTAAATTATATTCCTCCAGAAGTTAGAGAAAATACCGGCGAA GTAGAAGCGTTTCAACAAGAGCAAAAACTGATAAAGAATTCAGATATTCGTGGAGATCTTCATATGCACACTACCTGGAG TGATGGTGCTCAGTCTTTAGAAGAAATGGTAAATAAAGTTAGAGAAAAAGGGTATCAATTCATGGGGATTACCGATCACT CTAAGTATTTACGAGTAGCAAACGGATTAGACGAGGATCGCTTGCGAAAACAACGCGAAGAAATCTCACATTTAAATGAA AAATATGATGATTTTCATATTTTTTCAGGTGTTGAAATGGATATTAAACCCGATGGTGAATTAGATTTTTCTGATGATTT TCTACAAGAAATGGATTATGTAATTGCTGCTATTCATTCTAGTTTTAATCAATCTGAAGAGAAGATTATGGAGAGGCTAT CAGCAGCTTTAGAAAATCCATTTGTTTCAATAATTGCACATCCAACGGGAAGGTTACTTGGGCGGCGTTCGGGTTATTCT GTCGATATGGATATGCTGATACAAAAAGCGAAAGAAACAAATACTGTATTAGAAATTAATGCAAATCCAAATCGTTTGGA TTTATCCCATGAATGGGCGAGAAAGGCTCAAGAAGCAGGTGTATTGTTAGCAATTAATACAGATGCACATAATTATCAGA TGTTAGATCATATGAAATATGGTGTAGGGACAGCAAGAAAAGGATGGATAAAGCCATCAACTGTAATAAACAGTTGGACG AAAGAAGAGGTAGAGCGCTACTTTAACCGAGGTAAGTAA
Upstream 100 bases:
>100_bases GTATTTAATCAGCAGACGAATATTATTTGGAAGTAACTAACTCTAAAATATATAACTCTAGGTGGTTGCTTAACCGAAAA AGACTGGATTGGTGAATTAA
Downstream 100 bases:
>100_bases GTGCCCTTGGATGGACTTAGCTAAAAGGGGTTTTTAAAATGAATGAACGTGTATTACGTGTACTAGATTTCAAATCAGTA ACTGAAATGTTAAAAGGACA
Product: hypothetical protein
Products: NA
Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]
Number of amino acids: Translated: 572; Mature: 571
Protein sequence:
>572_residues MSINKKDIIKLLEKIAVYLELKGENPFKISAYRKAAQALETDDRSLSEMGDFTKIKGIGKGTSVVIEQFIQDGYSETLND LSKEVPPGLLPLLDLPGLGGKKLSKLYQELQVVDANSLKEACLTGKVEALSGFGKKSAEKIVKALDEVGKRPDRLPIATM LPLAEKIVGYLEEMDGIIRFSQAGSIRRMKESIKDLDFIIATENTERVRANLLDLPQIKEIIANGDTKVSVTIEDVYDIN VDFRLVQDKEFPTTLHHFTGSKDHNVAMRQLAKARGEKISEYGVEVEETGELITFETETEFFNHFGLNYIPPEVRENTGE VEAFQQEQKLIKNSDIRGDLHMHTTWSDGAQSLEEMVNKVREKGYQFMGITDHSKYLRVANGLDEDRLRKQREEISHLNE KYDDFHIFSGVEMDIKPDGELDFSDDFLQEMDYVIAAIHSSFNQSEEKIMERLSAALENPFVSIIAHPTGRLLGRRSGYS VDMDMLIQKAKETNTVLEINANPNRLDLSHEWARKAQEAGVLLAINTDAHNYQMLDHMKYGVGTARKGWIKPSTVINSWT KEEVERYFNRGK
Sequences:
>Translated_572_residues MSINKKDIIKLLEKIAVYLELKGENPFKISAYRKAAQALETDDRSLSEMGDFTKIKGIGKGTSVVIEQFIQDGYSETLND LSKEVPPGLLPLLDLPGLGGKKLSKLYQELQVVDANSLKEACLTGKVEALSGFGKKSAEKIVKALDEVGKRPDRLPIATM LPLAEKIVGYLEEMDGIIRFSQAGSIRRMKESIKDLDFIIATENTERVRANLLDLPQIKEIIANGDTKVSVTIEDVYDIN VDFRLVQDKEFPTTLHHFTGSKDHNVAMRQLAKARGEKISEYGVEVEETGELITFETETEFFNHFGLNYIPPEVRENTGE VEAFQQEQKLIKNSDIRGDLHMHTTWSDGAQSLEEMVNKVREKGYQFMGITDHSKYLRVANGLDEDRLRKQREEISHLNE KYDDFHIFSGVEMDIKPDGELDFSDDFLQEMDYVIAAIHSSFNQSEEKIMERLSAALENPFVSIIAHPTGRLLGRRSGYS VDMDMLIQKAKETNTVLEINANPNRLDLSHEWARKAQEAGVLLAINTDAHNYQMLDHMKYGVGTARKGWIKPSTVINSWT KEEVERYFNRGK >Mature_571_residues SINKKDIIKLLEKIAVYLELKGENPFKISAYRKAAQALETDDRSLSEMGDFTKIKGIGKGTSVVIEQFIQDGYSETLNDL SKEVPPGLLPLLDLPGLGGKKLSKLYQELQVVDANSLKEACLTGKVEALSGFGKKSAEKIVKALDEVGKRPDRLPIATML PLAEKIVGYLEEMDGIIRFSQAGSIRRMKESIKDLDFIIATENTERVRANLLDLPQIKEIIANGDTKVSVTIEDVYDINV DFRLVQDKEFPTTLHHFTGSKDHNVAMRQLAKARGEKISEYGVEVEETGELITFETETEFFNHFGLNYIPPEVRENTGEV EAFQQEQKLIKNSDIRGDLHMHTTWSDGAQSLEEMVNKVREKGYQFMGITDHSKYLRVANGLDEDRLRKQREEISHLNEK YDDFHIFSGVEMDIKPDGELDFSDDFLQEMDYVIAAIHSSFNQSEEKIMERLSAALENPFVSIIAHPTGRLLGRRSGYSV DMDMLIQKAKETNTVLEINANPNRLDLSHEWARKAQEAGVLLAINTDAHNYQMLDHMKYGVGTARKGWIKPSTVINSWTK EEVERYFNRGK
Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing
COG id: COG1796
COG function: function code L; DNA polymerase IV (family X)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PHP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002054 - InterPro: IPR010996 - InterPro: IPR003583 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR022311 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 64799; Mature: 64668
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINKKDIIKLLEKIAVYLELKGENPFKISAYRKAAQALETDDRSLSEMGDFTKIKGIGK CCCCHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCC GTSVVIEQFIQDGYSETLNDLSKEVPPGLLPLLDLPGLGGKKLSKLYQELQVVDANSLKE CHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCHHHHHH ACLTGKVEALSGFGKKSAEKIVKALDEVGKRPDRLPIATMLPLAEKIVGYLEEMDGIIRF HHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEE SQAGSIRRMKESIKDLDFIIATENTERVRANLLDLPQIKEIIANGDTKVSVTIEDVYDIN CCCCHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEEEECC VDFRLVQDKEFPTTLHHFTGSKDHNVAMRQLAKARGEKISEYGVEVEETGELITFETETE CEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCEECCCCEEEEECHHH FFNHFGLNYIPPEVRENTGEVEAFQQEQKLIKNSDIRGDLHMHTTWSDGAQSLEEMVNKV HHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH REKGYQFMGITDHSKYLRVANGLDEDRLRKQREEISHLNEKYDDFHIFSGVEMDIKPDGE HHCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCC LDFSDDFLQEMDYVIAAIHSSFNQSEEKIMERLSAALENPFVSIIAHPTGRLLGRRSGYS CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCC VDMDMLIQKAKETNTVLEINANPNRLDLSHEWARKAQEAGVLLAINTDAHNYQMLDHMKY CCHHHHHHHHHCCCCEEEECCCCCEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH GVGTARKGWIKPSTVINSWTKEEVERYFNRGK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SINKKDIIKLLEKIAVYLELKGENPFKISAYRKAAQALETDDRSLSEMGDFTKIKGIGK CCCHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCC GTSVVIEQFIQDGYSETLNDLSKEVPPGLLPLLDLPGLGGKKLSKLYQELQVVDANSLKE CHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCHHHHHH ACLTGKVEALSGFGKKSAEKIVKALDEVGKRPDRLPIATMLPLAEKIVGYLEEMDGIIRF HHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEE SQAGSIRRMKESIKDLDFIIATENTERVRANLLDLPQIKEIIANGDTKVSVTIEDVYDIN CCCCHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEEEECC VDFRLVQDKEFPTTLHHFTGSKDHNVAMRQLAKARGEKISEYGVEVEETGELITFETETE CEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCEECCCCEEEEECHHH FFNHFGLNYIPPEVRENTGEVEAFQQEQKLIKNSDIRGDLHMHTTWSDGAQSLEEMVNKV HHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH REKGYQFMGITDHSKYLRVANGLDEDRLRKQREEISHLNEKYDDFHIFSGVEMDIKPDGE HHCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCC LDFSDDFLQEMDYVIAAIHSSFNQSEEKIMERLSAALENPFVSIIAHPTGRLLGRRSGYS CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCC VDMDMLIQKAKETNTVLEINANPNRLDLSHEWARKAQEAGVLLAINTDAHNYQMLDHMKY CCHHHHHHHHHCCCCEEEECCCCCEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH GVGTARKGWIKPSTVINSWTKEEVERYFNRGK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]