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The map label for this gene is agaW [H]

Identifier: 21909980

GI number: 21909980

Start: 488868

End: 489650

Strand: Reverse

Name: agaW [H]

Synonym: SpyM3_0444

Alternate gene names: 21909980

Gene position: 489650-488868 (Counterclockwise)

Preceding gene: 21909981

Following gene: 21909979

Centisome position: 25.76

GC content: 43.55

Gene sequence:

>783_bases
ATGGATATCAATTTGTTACAGGCACTTTTAATTGGTCTTTGGACAGCCTTTTGTTTCAGCGGAATGTTACTTGGCATCTA
CACCAACCGTTGTAGTATTCTGTCTTTTGGTGTCGGGATTATCTTAGGTGACTTGCCAACTGCACTTAGCATGGGAGCTA
TCTCCGAATTAGCTTATATGGGATTTGGAGTGGGTGCTGGTGGTACCGTTCCTCCTAATCCTATCGGCCCTGGTATCTTT
GGTACCTTGATGGCTATTACCAGTGCTGGTAAAGTCACCCCAGAAGCGGCCCTAGCCTTATCAACACCAATCGCAGTTGC
CATCCAATTCCTTCAGACATTCGCCTATACAGCTTTCGCTGGGGCTCCTGAAACCGCTAAAAAACAATTGCAAAAAGGCA
ATATTAGAGGCTTCAAATTCGCTGCCAACGGCACTATCTGGGCTTTCGCTTTTATCGGATTAGGCCTTGGTTTATTAGGT
GCCTTGTCAATGGATACTCTCCTTCACTTGGTTGATTATATCCCACCTGTCTTGCTCAATGGATTGACTGTTGCTGGTAA
AATGTTACCTGCTATCGGATTTGCCATGATCTTATCAGTTATGGCCAAGAAGGAGTTGATTCCTTTTGTACTAATTGGTT
ATGTTTGTGCAGCCTACCTCCAAATTCCAACCATTGGTATCGCTATTATTGGTATCATTTTCGCCTTGAATGAATTTTAC
AACAAACCTAAACAAGTCGATGCAACAACTGTCCAAGGAGGCCAACAAGATGACTGGATCTAA

Upstream 100 bases:

>100_bases
TGACCACCAAGTGGTTTTTAACACCAAAACAACTCCAGCTGGCAATAGCGCCTCTGACGTTGACATCTTAGATTATATTT
AATGAATAAAGGAGATTGAT

Downstream 100 bases:

>100_bases
TAAATTAACCAAGAAAGATTACCTCAAAACAGCTCTGAGAGCTTTCTTCCTACAAAATGGGTTTAATTACAGTAATTACC
AAGGTATCGGATACGCCAAT

Product: PTS system N-acetylgalactosamine-specific transporter subunit IIC

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDINLLQALLIGLWTAFCFSGMLLGIYTNRCSILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI

Sequences:

>Translated_260_residues
MDINLLQALLIGLWTAFCFSGMLLGIYTNRCSILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI
>Mature_260_residues
MDINLLQALLIGLWTAFCFSGMLLGIYTNRCSILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=267, Percent_Identity=30.7116104868914, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788121, Length=249, Percent_Identity=28.9156626506024, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 27208; Mature: 27208

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]