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The map label for this gene is agaD [H]

Identifier: 21909979

GI number: 21909979

Start: 488060

End: 488881

Strand: Reverse

Name: agaD [H]

Synonym: SpyM3_0443

Alternate gene names: 21909979

Gene position: 488881-488060 (Counterclockwise)

Preceding gene: 21909980

Following gene: 21909978

Centisome position: 25.72

GC content: 40.51

Gene sequence:

>822_bases
ATGACTGGATCTAATAAATTAACCAAGAAAGATTACCTCAAAACAGCTCTGAGAGCTTTCTTCCTACAAAATGGGTTTAA
TTACAGTAATTACCAAGGTATCGGATACGCCAATGTCATCTATCCTGCCTTGAAAAAACATTTTGGCAGTGATAAAAAGG
GCTTATATCAAGCTTTAGAAGATAACTGTGAGTTTTACAATACTAACCCTCACTTCCTTCCTTTCATCACCAGTCTGCAC
TTGGTCATGTTAGAAAATGATCGTCCTGAAGAAGAAACCCGAAACATCAAAATGGCACTTATGGGGCCTTTAGCTGGTAT
CGGTGACTCCTTATCACAATTTTGCTTGGCACCACTCTTTTCAACGATTGCAGCTTCCTTAGCTAGTGATGGTCTGGTTT
TGGGACCAATTTTCTTCTTCCTAGCCATGAATATTATCCTAACCGCTATTAAAATCGGTTCTGGTCTCTATGGCTACAAG
GTCGGCACAAGCTTTATTGATAAACTAAGCGAACAAATGGCGGTTGTGTCGCGCATGGCAAATATTGTCGGCGTTACCGT
TATCGCTGGACTAGCGGCTACTTCTGTTAAAATAACTGTTCCCATTACTTTTGCGGCTGGCAAGGTGGATGCGGCCAATG
CAGCACAAAAATTTGTGACTATTCAAGGAATGCTTGATAAGATTGCCCCTGCACTTTTACCAGCTCTCTTTACCCTTCTA
ATGTACTACCTCATTAAAAACAAAAAATGGACAACCTACAAATTGGTTCTCCTCACTGTTCTTATCGGTATTATCGGTAG
CTGGTTAGGTATTTTAGCTTAA

Upstream 100 bases:

>100_bases
ACCATTGGTATCGCTATTATTGGTATCATTTTCGCCTTGAATGAATTTTACAACAAACCTAAACAAGTCGATGCAACAAC
TGTCCAAGGAGGCCAACAAG

Downstream 100 bases:

>100_bases
TGGTTCACAGAGACCTGTTATGAGCATAGGGAAATAGTTCCTAAGCACATGATGAGGTCTCTTTTCTTTTGGAAAGGAAA
CGTCCTATGTCTCTTGCTTT

Product: PTS system N-acetylgalactosamine-specific transporter subunit IID

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTGSNKLTKKDYLKTALRAFFLQNGFNYSNYQGIGYANVIYPALKKHFGSDKKGLYQALEDNCEFYNTNPHFLPFITSLH
LVMLENDRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPIFFFLAMNIILTAIKIGSGLYGYK
VGTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANAAQKFVTIQGMLDKIAPALLPALFTLL
MYYLIKNKKWTTYKLVLLTVLIGIIGSWLGILA

Sequences:

>Translated_273_residues
MTGSNKLTKKDYLKTALRAFFLQNGFNYSNYQGIGYANVIYPALKKHFGSDKKGLYQALEDNCEFYNTNPHFLPFITSLH
LVMLENDRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPIFFFLAMNIILTAIKIGSGLYGYK
VGTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANAAQKFVTIQGMLDKIAPALLPALFTLL
MYYLIKNKKWTTYKLVLLTVLIGIIGSWLGILA
>Mature_272_residues
TGSNKLTKKDYLKTALRAFFLQNGFNYSNYQGIGYANVIYPALKKHFGSDKKGLYQALEDNCEFYNTNPHFLPFITSLHL
VMLENDRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPIFFFLAMNIILTAIKIGSGLYGYKV
GTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANAAQKFVTIQGMLDKIAPALLPALFTLLM
YYLIKNKKWTTYKLVLLTVLIGIIGSWLGILA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=268, Percent_Identity=38.0597014925373, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1788122, Length=285, Percent_Identity=27.719298245614, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 29744; Mature: 29612

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSNKLTKKDYLKTALRAFFLQNGFNYSNYQGIGYANVIYPALKKHFGSDKKGLYQALE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
DNCEFYNTNPHFLPFITSLHLVMLENDRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHEEECCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
STIAASLASDGLVLGPIFFFLAMNIILTAIKIGSGLYGYKVGTSFIDKLSEQMAVVSRMA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIVGVTVIAGLAATSVKITVPITFAAGKVDAANAAQKFVTIQGMLDKIAPALLPALFTLL
HHHHHHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYYLIKNKKWTTYKLVLLTVLIGIIGSWLGILA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGSNKLTKKDYLKTALRAFFLQNGFNYSNYQGIGYANVIYPALKKHFGSDKKGLYQALE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
DNCEFYNTNPHFLPFITSLHLVMLENDRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHEEECCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
STIAASLASDGLVLGPIFFFLAMNIILTAIKIGSGLYGYKVGTSFIDKLSEQMAVVSRMA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIVGVTVIAGLAATSVKITVPITFAAGKVDAANAAQKFVTIQGMLDKIAPALLPALFTLL
HHHHHHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYYLIKNKKWTTYKLVLLTVLIGIIGSWLGILA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]