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The map label for this gene is ydgQ

Identifier: 21672401

GI number: 21672401

Start: 122708

End: 123379

Strand: Direct

Name: ydgQ

Synonym: BUsg110

Alternate gene names: 21672401

Gene position: 122708-123379 (Clockwise)

Preceding gene: 21672400

Following gene: 21672402

Centisome position: 19.13

GC content: 25.3

Gene sequence:

>672_bases
ATGGAATTCAAAAAATTTTTTAAAAAGAGATTGTGGAATAATAATTCTTCTTTAGTACAGCTTTTAGGTTTATGTCCAAT
TTTAGCCATGACTACAAATACTATTAATGCTATAGGATTAGGAATAACAACTACCTTTGTATTAACTATAACAAATAGTA
TTATTTCAATTTTAAAAAACTTTATACCTAAAGATATTAGAATTCCTATTTATATGATAATAGTTTCTTCGACAGTTACT
TGTATAGAAATGCTATTGCATGCTTATCAATTTAATTTATATCAGTCATTAGGCGTCTTCATTCCGTTAATAGTAACTAA
TTGTATTGTTGTTGGAAGAGCTGATTGTATTGCTTATAAAAGTTCTTTTGTAATTTCTTTTTTAGACGGTATGTCAATAG
GCTTAGGGTCAACCTTTGCAATGTTTGTAATTGGTTCCATACGTGAAATACTGGGAAATGGAACTTTTTTATTTGGTGCA
AATAAAATTTTTAATGTTTTAGATCATTCATTTTTTTTTACGTTCATAGATAAAAACTCTACAATAATTTTAGCTATGTT
ACCTTCAGGTGGATTTTTAGTATTAGGTTTTGTAATTGCTTTCAAAAATTATTTAGATTTAGGTAAAAAAAATTGTTTAA
AATGTTTTCATTCGTGTAAACTAAAAAAATAA

Upstream 100 bases:

>100_bases
ACTATTACACCTCAATCAGTTTCTAACGCTGTAAAAAGAACTGTTGTTTTTATTAAGAAAATACCATTAATATTTTCATT
ATAATAGAGTAAAAATATAT

Downstream 100 bases:

>100_bases
TATTAATATGAATAAAAAAAAACGTTTTGAAATTTTGTCTTTATTTTATAAAAAAAACTCTAATCCTAAGATAGAATTAG
TTTTTTCTTCTGATTTTGAA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MEFKKFFKKRLWNNNSSLVQLLGLCPILAMTTNTINAIGLGITTTFVLTITNSIISILKNFIPKDIRIPIYMIIVSSTVT
CIEMLLHAYQFNLYQSLGVFIPLIVTNCIVVGRADCIAYKSSFVISFLDGMSIGLGSTFAMFVIGSIREILGNGTFLFGA
NKIFNVLDHSFFFTFIDKNSTIILAMLPSGGFLVLGFVIAFKNYLDLGKKNCLKCFHSCKLKK

Sequences:

>Translated_223_residues
MEFKKFFKKRLWNNNSSLVQLLGLCPILAMTTNTINAIGLGITTTFVLTITNSIISILKNFIPKDIRIPIYMIIVSSTVT
CIEMLLHAYQFNLYQSLGVFIPLIVTNCIVVGRADCIAYKSSFVISFLDGMSIGLGSTFAMFVIGSIREILGNGTFLFGA
NKIFNVLDHSFFFTFIDKNSTIILAMLPSGGFLVLGFVIAFKNYLDLGKKNCLKCFHSCKLKK
>Mature_223_residues
MEFKKFFKKRLWNNNSSLVQLLGLCPILAMTTNTINAIGLGITTTFVLTITNSIISILKNFIPKDIRIPIYMIIVSSTVT
CIEMLLHAYQFNLYQSLGVFIPLIVTNCIVVGRADCIAYKSSFVISFLDGMSIGLGSTFAMFVIGSIREILGNGTFLFGA
NKIFNVLDHSFFFTFIDKNSTIILAMLPSGGFLVLGFVIAFKNYLDLGKKNCLKCFHSCKLKK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=205, Percent_Identity=53.1707317073171, Blast_Score=204, Evalue=4e-54,
Organism=Escherichia coli, GI1787914, Length=145, Percent_Identity=33.7931034482759, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFE_BUCAP (Q8KA17)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660468.1
- EnsemblBacteria:   EBBUCT00000000284
- GeneID:   1005927
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg110
- GeneTree:   EBGT00050000007905
- HOGENOM:   HBG624915
- OMA:   ENPVTKM
- ProtClustDB:   PRK12405
- BioCyc:   BAPH198804:BUSG110-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00478
- InterPro:   IPR003667
- InterPro:   IPR010968
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01948

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 24820; Mature: 24820

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbd52b30)-; HASH(0xbbdfe04)-; HASH(0xaef2628)-; HASH(0xbbf73a0)-; HASH(0x96a78a0)-; HASH(0xc121474)-; HASH(0x4046d40c)-;

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKKFFKKRLWNNNSSLVQLLGLCPILAMTTNTINAIGLGITTTFVLTITNSIISILKN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPKDIRIPIYMIIVSSTVTCIEMLLHAYQFNLYQSLGVFIPLIVTNCIVVGRADCIAYK
HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SSFVISFLDGMSIGLGSTFAMFVIGSIREILGNGTFLFGANKIFNVLDHSFFFTFIDKNS
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHEEEEEECCC
TIILAMLPSGGFLVLGFVIAFKNYLDLGKKNCLKCFHSCKLKK
EEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH
>Mature Secondary Structure
MEFKKFFKKRLWNNNSSLVQLLGLCPILAMTTNTINAIGLGITTTFVLTITNSIISILKN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPKDIRIPIYMIIVSSTVTCIEMLLHAYQFNLYQSLGVFIPLIVTNCIVVGRADCIAYK
HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SSFVISFLDGMSIGLGSTFAMFVIGSIREILGNGTFLFGANKIFNVLDHSFFFTFIDKNS
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHEEEEEECCC
TIILAMLPSGGFLVLGFVIAFKNYLDLGKKNCLKCFHSCKLKK
EEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438