Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is yebN [C]
Identifier: 21244909
GI number: 21244909
Start: 4930498
End: 4931082
Strand: Direct
Name: yebN [C]
Synonym: XAC4192
Alternate gene names: 21244909
Gene position: 4930498-4931082 (Clockwise)
Preceding gene: 21244908
Following gene: 21244911
Centisome position: 95.27
GC content: 63.76
Gene sequence:
>585_bases ATGTCTCCTTTTTCCATTGTGTTGATCGGTTTTGCGATGTCGACCGACGCGTTTGCCGCGGCGATCGGCAAGGGCGCGGC GATGCGCAAACCGCAGTGGCGCGACGCGCTACGCGCCGGCCTGATCTTCGGCTGCATCGAAGCCATCACCCCGGTGATCG GCTGGCTGCTGGGCCGGGCCGCAGCCAGTTATGTGTCTGCCTACGATCACTGGATCGCCTTCGTGCTGCTGGGCGCATTG GGCACGCACATGATCGTGGCCGGGCTGCGCAACGGGCCGGAAGATGCCGAAGATGCAGCCTCCGACACGCCGAAACGGCA TGGCGTGCTGGGCTTGGCCACCACCGGCTTTGCCACCAGCATCGATGCGATGGCGGTCGGCGTCAGCCTGGCGTTTCTCG ATGTGCATATCGGCGTGGTGGCGGTGGTGGTGGGCCTATGCACCTTCAGCATGGTCACTGCTGGAGTGATGCTGGGCCGC GCGCTGGGCAATCTGATCGGCAAGCGCGCCGAAATGTTGGGTGGATTGATTCTGGTGATCGTCGGCAGCGTGATTCTTTA CGAGCACCTGAGCGGCGCCGGGTAA
Upstream 100 bases:
>100_bases AGGCAACCAGTTTCGGTTTGGCGAGACCAGCGGCATGCGTGCACGACGACGGTTGGCGCGGGCGCATGCCGTTGTGACCG TGCCCAACCCGAGAGTGTCG
Downstream 100 bases:
>100_bases GTTGCTGTAGGAGCGCACCCGGGCGCGAGAGGCGTTATCGATGACGCCTCTCGCGCCCAGGTGCGCTCCTACGCTGCATG GGATTGCGACCCGCACGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MSPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRAAASYVSAYDHWIAFVLLGAL GTHMIVAGLRNGPEDAEDAASDTPKRHGVLGLATTGFATSIDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGR ALGNLIGKRAEMLGGLILVIVGSVILYEHLSGAG
Sequences:
>Translated_194_residues MSPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRAAASYVSAYDHWIAFVLLGAL GTHMIVAGLRNGPEDAEDAASDTPKRHGVLGLATTGFATSIDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGR ALGNLIGKRAEMLGGLILVIVGSVILYEHLSGAG >Mature_193_residues SPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRAAASYVSAYDHWIAFVLLGALG THMIVAGLRNGPEDAEDAASDTPKRHGVLGLATTGFATSIDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGRA LGNLIGKRAEMLGGLILVIVGSVILYEHLSGAG
Specific function: Unknown
COG id: COG1971
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0059 family [H]
Homologues:
Organism=Escherichia coli, GI87081981, Length=192, Percent_Identity=51.0416666666667, Blast_Score=184, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003810 - InterPro: IPR022929 [H]
Pfam domain/function: PF02659 DUF204 [H]
EC number: NA
Molecular weight: Translated: 19910; Mature: 19779
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRA CCCHHEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AASYVSAYDHWIAFVLLGALGTHMIVAGLRNGPEDAEDAASDTPKRHGVLGLATTGFATS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHCCEEEEECCCHHHH IDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGRALGNLIGKRAEMLGGLILVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGSVILYEHLSGAG HHHHHHHHHHCCCC >Mature Secondary Structure SPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRA CCHHEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AASYVSAYDHWIAFVLLGALGTHMIVAGLRNGPEDAEDAASDTPKRHGVLGLATTGFATS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHCCEEEEECCCHHHH IDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGRALGNLIGKRAEMLGGLILVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGSVILYEHLSGAG HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA