Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is 21244058
Identifier: 21244058
GI number: 21244058
Start: 3927425
End: 3929023
Strand: Reverse
Name: 21244058
Synonym: XAC3333
Alternate gene names: NA
Gene position: 3929023-3927425 (Counterclockwise)
Preceding gene: 21244059
Following gene: 21244054
Centisome position: 75.92
GC content: 67.04
Gene sequence:
>1599_bases ATGTCTGCAATCAACGATCGGGGAGGCGTCGCCGAGGCACGCCAGGGTAGCCGCTGGCGCTTCTATCGCGCGGTGTGGCG CTGGCATTTTTATGCCGGGCTGCTCGTGCTGCCTTTCATCATCTGGCTGGCGGTGACCGGGGCTGCGTTCCTGTACCAGG ACGCCATCGACCGCAGCGTGCACCACGGGTTGAAGGTGGTGCCGATAGGCGATGCGCGCCTGCCCGCACAGCAGTTGGTT GCCGCTGCACAAGGGCGCTACGGCGGCAGCTTGTTTGTGTACACCACGCCCAAACGCGCCGATGCGAGCGCCGAGATCGG GCTGGTGGATGCGCACGGCATGCGGCGGGTGGCGTATGTCGATCCGTACCGTGCGCGGGTGTTGGGCGCCCTGCCCGAGC ACGGCACGCTCAGCTGGACGATCCGCCGGCTGCATAGTCTTGCGCTGGTGGGGCCATATGCCCGCGGCCTGATCGAAATG GCCGGCGGATGGGCCATCGTGCTGGTGCTCACGGGGGTGTATCTGTGGTGGCCGCGCGGGCGACGCGGCGGCGTGATCAG TGTGCGTGGCAAACCGAAACAGCGGCTGTTCTGGCGCGACCTGCACGCAGTGACCGGTGCCGGGGTCGGTGCGATCCTGC TGTTTCTGGCGCTGACCGGCATGCCGTGGTCGTGGCTATGGGGCGCGCAGGTCAATCGCTGGGCCAATGGGCATGATTTC GGCTATCCGGCCGGGCTGCGCGTGCAGCAGCCGATGTCGCAGCAGCGCTTGGCCGACAGTGGCGAGCCAGCGTGGTCGTT GCGGCAGGCGCGCCTGCCGGAATCTGTGGTGCCTGCACAGCGAACTGGCGCGGTGGATGAGCACGCGCATGGTCAGCAAG CACGTGCGTTGCAGATGGGCGACGAGCATTTTGAGCACTCCGGGCACTCCGGGCACGGAGCGCTCCCAGCGAACGCAGCG CATGCAGGCCACGAAGAACACGCAGCGCACCCTGGCCAGTCGGAGCACGCGCACTCGGCAGACAACGCACATGCCGATCA CGGCGATTCCGCTGGATTCGCTGCGCCGGGACGCGGCGCGATCGGTCTGGACGCAGCGATGGCGCGTTTCGAGGCACGCG GCATCCTGCCGGGATATAGCGTGGCGCCGCCGCGTGGTGCGACCGGGGTCTATACCGCGTCGGTGTACCCGGCCGATCTG CAGCGGCAGCGGGTGATCCATTTGGATCAGTACAGCGGTGCGGTACTGCTGGACATGCGCTATCGCGACTACGGGCCGCT GGCCAAGCTGTTGGAATGGGGCATCAACGTGCACCTGGGGCAGCAATACGGCACTGCCAATCAGTTGATCCTGTTGTTCG TCTGCATCGCCATCGTGCTGTTGTGCGTCAGCGCGGCGGTGATGTGGTGGAAGCGCTGCCCCAGCGGTGGCTTGGGCGTA CCGCCGTTGCCTGCCGACCCGCGCACGCTACGCGGCCTGATGGCGTTGCTGGTGCTGTGCGGGCTGATCTTCCCGCTGGT CGGCCTGTCGTTGTTGCTGATGTGGGCGTTCGATCGTTACTGGATGCGGCGCGCTCACGCCGATGCGTCGGCGGGGTGA
Upstream 100 bases:
>100_bases CCGATCGTGCGTATGTGTACGCCTGGTACGACAGTGGCAGCTCCGGTTACTCACCCGGCGATGGGCGTGCGTTGTCGGTG TCGTGGGATTGGAGCTTCTG
Downstream 100 bases:
>100_bases TGCGTGCGCCGGTGCATGAGTGCAGCTCGCAGCGCACTGCCGTTGCATCCTGGATGCAGCATGCGCATGCAGCTGCCGCA CATGCGGGTGAAGCGTCACT
Product: hypothetical protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix Domain Protein; Iron-Regulated Membrane Protein; PepSY-Associated TM Helix Family; Sulfite Reductase; Peptidase; PepSY-Associated TM Helix Domain-Containing Protein; PepSY-Associated Membrane Protein; PepSY-Associated TM Helix Containing Protein; PepSY-Associated TM Helix; Pepsy-Associated Tm Helix Domain Protein; Outer Membrane Protein; PepSY Amd Peptidase M4 Protein; Conserved Iron-Regulated Membrane Protein; M4 Family Peptidase; PepSY-Associated TM Helix Family Protein; Sulfite Reductase Flavoprotein Subunit Alpha; Transmembrane Transporter
Number of amino acids: Translated: 532; Mature: 531
Protein sequence:
>532_residues MSAINDRGGVAEARQGSRWRFYRAVWRWHFYAGLLVLPFIIWLAVTGAAFLYQDAIDRSVHHGLKVVPIGDARLPAQQLV AAAQGRYGGSLFVYTTPKRADASAEIGLVDAHGMRRVAYVDPYRARVLGALPEHGTLSWTIRRLHSLALVGPYARGLIEM AGGWAIVLVLTGVYLWWPRGRRGGVISVRGKPKQRLFWRDLHAVTGAGVGAILLFLALTGMPWSWLWGAQVNRWANGHDF GYPAGLRVQQPMSQQRLADSGEPAWSLRQARLPESVVPAQRTGAVDEHAHGQQARALQMGDEHFEHSGHSGHGALPANAA HAGHEEHAAHPGQSEHAHSADNAHADHGDSAGFAAPGRGAIGLDAAMARFEARGILPGYSVAPPRGATGVYTASVYPADL QRQRVIHLDQYSGAVLLDMRYRDYGPLAKLLEWGINVHLGQQYGTANQLILLFVCIAIVLLCVSAAVMWWKRCPSGGLGV PPLPADPRTLRGLMALLVLCGLIFPLVGLSLLLMWAFDRYWMRRAHADASAG
Sequences:
>Translated_532_residues MSAINDRGGVAEARQGSRWRFYRAVWRWHFYAGLLVLPFIIWLAVTGAAFLYQDAIDRSVHHGLKVVPIGDARLPAQQLV AAAQGRYGGSLFVYTTPKRADASAEIGLVDAHGMRRVAYVDPYRARVLGALPEHGTLSWTIRRLHSLALVGPYARGLIEM AGGWAIVLVLTGVYLWWPRGRRGGVISVRGKPKQRLFWRDLHAVTGAGVGAILLFLALTGMPWSWLWGAQVNRWANGHDF GYPAGLRVQQPMSQQRLADSGEPAWSLRQARLPESVVPAQRTGAVDEHAHGQQARALQMGDEHFEHSGHSGHGALPANAA HAGHEEHAAHPGQSEHAHSADNAHADHGDSAGFAAPGRGAIGLDAAMARFEARGILPGYSVAPPRGATGVYTASVYPADL QRQRVIHLDQYSGAVLLDMRYRDYGPLAKLLEWGINVHLGQQYGTANQLILLFVCIAIVLLCVSAAVMWWKRCPSGGLGV PPLPADPRTLRGLMALLVLCGLIFPLVGLSLLLMWAFDRYWMRRAHADASAG >Mature_531_residues SAINDRGGVAEARQGSRWRFYRAVWRWHFYAGLLVLPFIIWLAVTGAAFLYQDAIDRSVHHGLKVVPIGDARLPAQQLVA AAQGRYGGSLFVYTTPKRADASAEIGLVDAHGMRRVAYVDPYRARVLGALPEHGTLSWTIRRLHSLALVGPYARGLIEMA GGWAIVLVLTGVYLWWPRGRRGGVISVRGKPKQRLFWRDLHAVTGAGVGAILLFLALTGMPWSWLWGAQVNRWANGHDFG YPAGLRVQQPMSQQRLADSGEPAWSLRQARLPESVVPAQRTGAVDEHAHGQQARALQMGDEHFEHSGHSGHGALPANAAH AGHEEHAAHPGQSEHAHSADNAHADHGDSAGFAAPGRGAIGLDAAMARFEARGILPGYSVAPPRGATGVYTASVYPADLQ RQRVIHLDQYSGAVLLDMRYRDYGPLAKLLEWGINVHLGQQYGTANQLILLFVCIAIVLLCVSAAVMWWKRCPSGGLGVP PLPADPRTLRGLMALLVLCGLIFPLVGLSLLLMWAFDRYWMRRAHADASAG
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57920; Mature: 57789
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAINDRGGVAEARQGSRWRFYRAVWRWHFYAGLLVLPFIIWLAVTGAAFLYQDAIDRSV CCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHGLKVVPIGDARLPAQQLVAAAQGRYGGSLFVYTTPKRADASAEIGLVDAHGMRRVAYV HCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEE DPYRARVLGALPEHGTLSWTIRRLHSLALVGPYARGLIEMAGGWAIVLVLTGVYLWWPRG CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC RRGGVISVRGKPKQRLFWRDLHAVTGAGVGAILLFLALTGMPWSWLWGAQVNRWANGHDF CCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCHHHCCCCCCCC GYPAGLRVQQPMSQQRLADSGEPAWSLRQARLPESVVPAQRTGAVDEHAHGQQARALQMG CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHCCCHHCCCCCHHCCCHHHHHHHHC DEHFEHSGHSGHGALPANAAHAGHEEHAAHPGQSEHAHSADNAHADHGDSAGFAAPGRGA HHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IGLDAAMARFEARGILPGYSVAPPRGATGVYTASVYPADLQRQRVIHLDQYSGAVLLDMR CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHEEEEECCCCEEEEEEC YRDYGPLAKLLEWGINVHLGQQYGTANQLILLFVCIAIVLLCVSAAVMWWKRCPSGGLGV CCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PPLPADPRTLRGLMALLVLCGLIFPLVGLSLLLMWAFDRYWMRRAHADASAG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SAINDRGGVAEARQGSRWRFYRAVWRWHFYAGLLVLPFIIWLAVTGAAFLYQDAIDRSV CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHGLKVVPIGDARLPAQQLVAAAQGRYGGSLFVYTTPKRADASAEIGLVDAHGMRRVAYV HCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEE DPYRARVLGALPEHGTLSWTIRRLHSLALVGPYARGLIEMAGGWAIVLVLTGVYLWWPRG CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC RRGGVISVRGKPKQRLFWRDLHAVTGAGVGAILLFLALTGMPWSWLWGAQVNRWANGHDF CCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCHHHCCCCCCCC GYPAGLRVQQPMSQQRLADSGEPAWSLRQARLPESVVPAQRTGAVDEHAHGQQARALQMG CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHCCCHHCCCCCHHCCCHHHHHHHHC DEHFEHSGHSGHGALPANAAHAGHEEHAAHPGQSEHAHSADNAHADHGDSAGFAAPGRGA HHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IGLDAAMARFEARGILPGYSVAPPRGATGVYTASVYPADLQRQRVIHLDQYSGAVLLDMR CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHEEEEECCCCEEEEEEC YRDYGPLAKLLEWGINVHLGQQYGTANQLILLFVCIAIVLLCVSAAVMWWKRCPSGGLGV CCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PPLPADPRTLRGLMALLVLCGLIFPLVGLSLLLMWAFDRYWMRRAHADASAG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA