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The map label for this gene is rlpA [C]

Identifier: 21241434

GI number: 21241434

Start: 786246

End: 787673

Strand: Direct

Name: rlpA [C]

Synonym: XAC0663

Alternate gene names: 21241434

Gene position: 786246-787673 (Clockwise)

Preceding gene: 21241433

Following gene: 21241435

Centisome position: 15.19

GC content: 68.49

Gene sequence:

>1428_bases
ATGAACAGCATTGCAGGCCCCAAGTGGCTGATCCCGATGGCGCTGATGCTTGGCCTGGCGTCCTGTAGCAGCGCACCGAA
GAAAACTGCCGGCGGCAACGGCAGCGGTGCGATCAAGGGTGTGAAGGTCGAAGGCAAGGGTCCGGCGTATGTCGCCACCG
GTTGCCCGTCCACCTCGCCGTATGCGCCCGCCAAGGAAGACCCGTCCACGCGCGGCGACTACACCGCTGGCGGCTTGTAC
AAGCCCGGGGTGAAAGACTCCACGCCCGATCATGTGCCCAACGTGGCCTGCATCCCCGAGCCACTGGTCACCAACGAGCC
GCGCTCGGCGGTGGGGAACCGTTCGCCGTACGAAGTGCTGGGCAAGCGCTATGTGGTGATGGACAACCCGGGCGACTATG
TCGAACGCGGCACCGCCTCGTACTACGGCAACAAGTTCCATGGCCGGCTGACCTCCAACAAGGAGGTGTACGACATGTAC
GCCTTCACCGCCGCGCACAAGACCTTGCCGCTGCCCAGCTTTGCGCTGGTCACCAATACCGACACCGGCCAGTCGGTGGT
GGTGCGCGTCAACGACCGCGGCCCATTTCACGACGGCCGCGTGATCGATCTGAGCTATGCCGCGGCGGTGAAGTTGGGCA
TCACCGGCAAGGGCACCGGCAATGTCGAAGTCCGCGGCCTCACCGAAGCCGACAACGGCAATCTGCTCGCCAAGCGCCGC
AGTGGCCAGGCACCGGTGAATACCGCCGTGGCCACGGCGCGGCCGGCTGCCGGCGCCAGCCAGATCGATGGCCTGGTGCA
GCGCTTGCCCACGCGCACCGTGCCGCCGCGTGCGGTCGCCACCGGTGCCACCGGTGCCGGCACCGGCGCCGCGGTGACCG
CGTCCACCACAGCCCCCACTGGCAGCGCGCCGGTCGCTGCGGCTGGCGAGCGTTGGCGTTACCGCGTTGCCGACTCGCGC
CAACCCGGCAATGCCGACAACTTCGATGCCTGGATGAAGGCGCAGGGCGTGCGTGTGGCCACCGGCAAGCCGGCCGCTGC
GGCCCCGCGACCGGCCGCGTCAGTGTCTGCCGCCGTACCCGCCGCGGCGCCGCCAGTGGCGGTTGCGGCGGTCAAGCCGT
CCGAAAGCACTGCCTCGCGCCCGCTCAAGGCCGAGCCAGCGCCCGCCAAGGCACCCAGCGTGGCCGAAGCCGCACTTGGC
GACATCCTGCTGCAGGTCGCCAGTTTCGCCAGCCGCGAAAACGCCAATCGCGCACTGTCGCAACTGGCCTCGGCGGGGAT
TGCCGGTGCCAGCGTCAGCGACATCGTCAGTGGCGGGCGCACGCTGTGGCGGCTACGCGTGAATGCGCGCGACCATGCAA
ATGCGTCGGAGATTGCCCAGCGTATCGCCGGACTCGGTTTCGGTCGTCCGCAGATCGTGGCCAATTAA

Upstream 100 bases:

>100_bases
AGAACTTTTATGCGATCACCCGTTACAACATTTCCAAGATGTATGCGATGGCCGTGTTCCAGCTGTCCGAGGCCATCGCC
GGCAAGGAGTTACCCCCGGC

Downstream 100 bases:

>100_bases
TGCGCACGGGTCGGTCACCACGTCGCTGATCGAGCGTGAGCGCACCCGCTGCTTGCGCGTTGGCTGCATCGGCGTTACCG
GGAACGGCTGAGCACCCCAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNSIAGPKWLIPMALMLGLASCSSAPKKTAGGNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDSTPDHVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVNTAVATARPAAGASQIDGLVQRLPTRTVPPRAVATGATGAGTGAAVTASTTAPTGSAPVAAAGERWRYRVADSR
QPGNADNFDAWMKAQGVRVATGKPAAAAPRPAASVSAAVPAAAPPVAVAAVKPSESTASRPLKAEPAPAKAPSVAEAALG
DILLQVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN

Sequences:

>Translated_475_residues
MNSIAGPKWLIPMALMLGLASCSSAPKKTAGGNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDSTPDHVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVNTAVATARPAAGASQIDGLVQRLPTRTVPPRAVATGATGAGTGAAVTASTTAPTGSAPVAAAGERWRYRVADSR
QPGNADNFDAWMKAQGVRVATGKPAAAAPRPAASVSAAVPAAAPPVAVAAVKPSESTASRPLKAEPAPAKAPSVAEAALG
DILLQVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
>Mature_475_residues
MNSIAGPKWLIPMALMLGLASCSSAPKKTAGGNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDSTPDHVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVNTAVATARPAAGASQIDGLVQRLPTRTVPPRAVATGATGAGTGAAVTASTTAPTGSAPVAAAGERWRYRVADSR
QPGNADNFDAWMKAQGVRVATGKPAAAAPRPAASVSAAVPAAAPPVAVAAVKPSESTASRPLKAEPAPAKAPSVAEAALG
DILLQVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=392, Percent_Identity=27.8061224489796, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 48485; Mature: 48485

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIAGPKWLIPMALMLGLASCSSAPKKTAGGNGSGAIKGVKVEGKGPAYVATGCPSTSP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC
YAPAKEDPSTRGDYTAGGLYKPGVKDSTPDHVPNVACIPEPLVTNEPRSAVGNRSPYEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCHHHH
GKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMYAFTAAHKTLPLPSFALVTNT
CCEEEEECCCCHHHHCCCHHHCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECC
DTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEECC
SGQAPVNTAVATARPAAGASQIDGLVQRLPTRTVPPRAVATGATGAGTGAAVTASTTAPT
CCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEECCCCCC
GSAPVAAAGERWRYRVADSRQPGNADNFDAWMKAQGVRVATGKPAAAAPRPAASVSAAVP
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCC
AAAPPVAVAAVKPSESTASRPLKAEPAPAKAPSVAEAALGDILLQVASFASRENANRALS
CCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
HHHHCCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure
MNSIAGPKWLIPMALMLGLASCSSAPKKTAGGNGSGAIKGVKVEGKGPAYVATGCPSTSP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC
YAPAKEDPSTRGDYTAGGLYKPGVKDSTPDHVPNVACIPEPLVTNEPRSAVGNRSPYEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCHHHH
GKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMYAFTAAHKTLPLPSFALVTNT
CCEEEEECCCCHHHHCCCHHHCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECC
DTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEECC
SGQAPVNTAVATARPAAGASQIDGLVQRLPTRTVPPRAVATGATGAGTGAAVTASTTAPT
CCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEECCCCCC
GSAPVAAAGERWRYRVADSRQPGNADNFDAWMKAQGVRVATGKPAAAAPRPAASVSAAVP
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCC
AAAPPVAVAAVKPSESTASRPLKAEPAPAKAPSVAEAALGDILLQVASFASRENANRALS
CCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
HHHHCCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]