Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is dcp [H]
Identifier: 21241023
GI number: 21241023
Start: 296221
End: 298299
Strand: Direct
Name: dcp [H]
Synonym: XAC0249
Alternate gene names: 21241023
Gene position: 296221-298299 (Clockwise)
Preceding gene: 21241022
Following gene: 21241025
Centisome position: 5.72
GC content: 63.2
Gene sequence:
>2079_bases GTGCCCGAGAAAACCGCCCCGGCTCCGGCCGCGGATGCTGCATCCAACCCCTTGCTGACCGCCAGCACGCTGCCGTTCCA GGCGCCGCCGTTCGACAAGATCCAGGACGCCGATTATCTGCCGGCGTTCGAAGAAGGCATGCGCCAGCATCTGGCCGACA TCCGCAAGATCGCCGATAACCCAGAAGCGCCGACCTTCGACAACACCATCGAAGCGATGGAGCGCGGCGGCGAAACGCTC ACGCGCGTGTCGCGCATCTTCTTCGGGCTGGTGCAGGCCGATACCAGCGACGCACGCCAGAAAATCCAGGAAGAGATCGC GCCCAAGCTGGCCGCGCATCAGGACGAGATCAATCTCGACCCCAAACTCTTCGCCCGCGTCAAGACCATCTACGACCAGC GCGACACGCTGAATCTGGATCCGGAGCAGAAGCGTCTGGTCGAGCGCGACTACGAAGAGCTGGTACGCGCCGGCGCGCAG TTGTCCGATGCCGACAAGGACAGCCTGCGCAAGCTCAACGTGGAAGAAACCACCCTCTCCACGCAGTTCCATACCCGCCT GGTCGCCGCCTCGGCTGCCGGCGCGGTGGTGGTGGACGACAAGGCCAAGCTCGATGGCCTGAGCGAAGGCGATATCGCCG CCGCGGCCGATGCCGCCAAGGCCCGCAAGCTCGATGGCAAGTATCTGCTCACTCTGCAGAACACCACCCAGCAGCCGGTG CTGGCGTCGCTGAAAAATCGCGAGCTGCGTGCCGAGGTATTGAAGGCCTCTGAGACGCGCGCGGAAAAGGGCGATGCCAA CGACACCCGCCAGACCATCCAGCGGCTGGCGCAGCTGCGCGCGCAGAAGGCCAAGTTGCTCGGCTTCGACAACTACGCCG CCTACAGCCTGGGCGACCAGATGGCCAAGACGCCGGATGCCGCGCTCAAGCTGCTGACCGACACCGTGCCGGCTGCCACT GCCAAGGCACGCCGCGAAGCGGCCGAGATGCAGAAGGTCATCGACGCGCAGAAAGGCGGCTTCAAACTCGCCGCCTCCGA TTGGGACGTCTACGCCGAGCAGGTGCGCAAGGCCAAGTACGACCTGGACGAATCCCAGATCAAGCCGTACTTCGAACTGG ACAACGTGCTCAACAACGGCGTGTTCTACGCCGCCACGCAGCTGTACGGCATCACGTTCAAGCAGCGCACCGACATCCCG ACCTATCACGCGGATATGAAGGTGTATGAGGTGTTCGATGCCGACGGCACCTCGATGGCGTTGTTCTACACCGACTACTT CAAGCGCGACAGCAAGTCCGGTGGCGCGTGGATGGACGTGTTCGTCGAGCAAGACGGCCTGACCGGTGCCAAGCCGGTGG TCTACAACGTGTGCAACTTCACCAAGCCGGCCGCCGGCCAGCCGGCGCTGCTCAGCTTCGACGACGTCACCACCTTGTTC CATGAGTTCGGCCATGCGCTGCATGGCATGTTCTCCAAGGTGAAGTACCCCTCGATTGCCGGCACCAGCACCTCGCGCGA CTTCGTGGAATTCCCCTCGCAGTTCAACGAGCACTGGGCGTCCGATCCGAAGGTCTTCGCCAACTACGCCAAGCACTACC AGACCGGCGCAGCGATGCCGGCCGAGCTGGTGGAAAAGATCAAGAAGGCCAAGACCTTCAACAGCGGCTACGCCACCACC GAATACCTGTCGGCGGCGCTGCTGGATCTGGCCTGGCATACCCAGCCGGCCGATGCGCCGCTGCAGGACGTGAGCAAGTT CGAAGCCGATGCCTTGAAGCGCTTCAAGGTGGATCTGGCCGAAGTGCCGCCGCGCTACCGCAGCAGTTATTTCGATCACA TCTGGGGCGGCGGGTATTCGGCCGGGTACTACGCGTACTTCTGGTCGGAAGTGCTCGACGACGATGCGTTCGAATGGTTC AAGGAAAACGGTGGCCTGACCCGCAAGAACGGCGATACCTTCCGCGCCAAGATCCTCTCGCGCGGCAATACTGTCGATCT GGCCACGTTGTACCGCGATTTCCGCGGCAAGGACCCCAGCGTCAAGGCGCTGCTGGAAAACCGCGGGTTGACCGAGTGA
Upstream 100 bases:
>100_bases ATCACACGCCATGTCGCGTACCGTCGTTCTGGCCGCTGCCATCACCCTGGCACTGGCTGCTTGTTCTGGAAAAGAGTCGT CTGGCCAGGAGTCCACCACC
Downstream 100 bases:
>100_bases GCGATGTGCGTGCGTAGGCATGCATGCCTCGCCAGTGCGATTGGCAAACAAAGACGGGATGGCCATGGCCATCCCGTCTT TGTTCGTGCGCATGTGACGC
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 692; Mature: 691
Protein sequence:
>692_residues MPEKTAPAPAADAASNPLLTASTLPFQAPPFDKIQDADYLPAFEEGMRQHLADIRKIADNPEAPTFDNTIEAMERGGETL TRVSRIFFGLVQADTSDARQKIQEEIAPKLAAHQDEINLDPKLFARVKTIYDQRDTLNLDPEQKRLVERDYEELVRAGAQ LSDADKDSLRKLNVEETTLSTQFHTRLVAASAAGAVVVDDKAKLDGLSEGDIAAAADAAKARKLDGKYLLTLQNTTQQPV LASLKNRELRAEVLKASETRAEKGDANDTRQTIQRLAQLRAQKAKLLGFDNYAAYSLGDQMAKTPDAALKLLTDTVPAAT AKARREAAEMQKVIDAQKGGFKLAASDWDVYAEQVRKAKYDLDESQIKPYFELDNVLNNGVFYAATQLYGITFKQRTDIP TYHADMKVYEVFDADGTSMALFYTDYFKRDSKSGGAWMDVFVEQDGLTGAKPVVYNVCNFTKPAAGQPALLSFDDVTTLF HEFGHALHGMFSKVKYPSIAGTSTSRDFVEFPSQFNEHWASDPKVFANYAKHYQTGAAMPAELVEKIKKAKTFNSGYATT EYLSAALLDLAWHTQPADAPLQDVSKFEADALKRFKVDLAEVPPRYRSSYFDHIWGGGYSAGYYAYFWSEVLDDDAFEWF KENGGLTRKNGDTFRAKILSRGNTVDLATLYRDFRGKDPSVKALLENRGLTE
Sequences:
>Translated_692_residues MPEKTAPAPAADAASNPLLTASTLPFQAPPFDKIQDADYLPAFEEGMRQHLADIRKIADNPEAPTFDNTIEAMERGGETL TRVSRIFFGLVQADTSDARQKIQEEIAPKLAAHQDEINLDPKLFARVKTIYDQRDTLNLDPEQKRLVERDYEELVRAGAQ LSDADKDSLRKLNVEETTLSTQFHTRLVAASAAGAVVVDDKAKLDGLSEGDIAAAADAAKARKLDGKYLLTLQNTTQQPV LASLKNRELRAEVLKASETRAEKGDANDTRQTIQRLAQLRAQKAKLLGFDNYAAYSLGDQMAKTPDAALKLLTDTVPAAT AKARREAAEMQKVIDAQKGGFKLAASDWDVYAEQVRKAKYDLDESQIKPYFELDNVLNNGVFYAATQLYGITFKQRTDIP TYHADMKVYEVFDADGTSMALFYTDYFKRDSKSGGAWMDVFVEQDGLTGAKPVVYNVCNFTKPAAGQPALLSFDDVTTLF HEFGHALHGMFSKVKYPSIAGTSTSRDFVEFPSQFNEHWASDPKVFANYAKHYQTGAAMPAELVEKIKKAKTFNSGYATT EYLSAALLDLAWHTQPADAPLQDVSKFEADALKRFKVDLAEVPPRYRSSYFDHIWGGGYSAGYYAYFWSEVLDDDAFEWF KENGGLTRKNGDTFRAKILSRGNTVDLATLYRDFRGKDPSVKALLENRGLTE >Mature_691_residues PEKTAPAPAADAASNPLLTASTLPFQAPPFDKIQDADYLPAFEEGMRQHLADIRKIADNPEAPTFDNTIEAMERGGETLT RVSRIFFGLVQADTSDARQKIQEEIAPKLAAHQDEINLDPKLFARVKTIYDQRDTLNLDPEQKRLVERDYEELVRAGAQL SDADKDSLRKLNVEETTLSTQFHTRLVAASAAGAVVVDDKAKLDGLSEGDIAAAADAAKARKLDGKYLLTLQNTTQQPVL ASLKNRELRAEVLKASETRAEKGDANDTRQTIQRLAQLRAQKAKLLGFDNYAAYSLGDQMAKTPDAALKLLTDTVPAATA KARREAAEMQKVIDAQKGGFKLAASDWDVYAEQVRKAKYDLDESQIKPYFELDNVLNNGVFYAATQLYGITFKQRTDIPT YHADMKVYEVFDADGTSMALFYTDYFKRDSKSGGAWMDVFVEQDGLTGAKPVVYNVCNFTKPAAGQPALLSFDDVTTLFH EFGHALHGMFSKVKYPSIAGTSTSRDFVEFPSQFNEHWASDPKVFANYAKHYQTGAAMPAELVEKIKKAKTFNSGYATTE YLSAALLDLAWHTQPADAPLQDVSKFEADALKRFKVDLAEVPPRYRSSYFDHIWGGGYSAGYYAYFWSEVLDDDAFEWFK ENGGLTRKNGDTFRAKILSRGNTVDLATLYRDFRGKDPSVKALLENRGLTE
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=595, Percent_Identity=29.5798319327731, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI14149738, Length=643, Percent_Identity=27.8382581648523, Blast_Score=208, Evalue=1e-53, Organism=Homo sapiens, GI156105687, Length=658, Percent_Identity=22.3404255319149, Blast_Score=135, Evalue=2e-31, Organism=Escherichia coli, GI1787819, Length=676, Percent_Identity=55.7692307692308, Blast_Score=777, Evalue=0.0, Organism=Escherichia coli, GI1789913, Length=686, Percent_Identity=32.5072886297376, Blast_Score=366, Evalue=1e-102, Organism=Caenorhabditis elegans, GI32565901, Length=455, Percent_Identity=23.0769230769231, Blast_Score=78, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6319793, Length=659, Percent_Identity=26.2518968133536, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6322715, Length=474, Percent_Identity=25.1054852320675, Blast_Score=132, Evalue=1e-31, Organism=Drosophila melanogaster, GI21356111, Length=571, Percent_Identity=25.2189141856392, Blast_Score=164, Evalue=2e-40, Organism=Drosophila melanogaster, GI20129717, Length=420, Percent_Identity=26.9047619047619, Blast_Score=137, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 76957; Mature: 76826
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEKTAPAPAADAASNPLLTASTLPFQAPPFDKIQDADYLPAFEEGMRQHLADIRKIADN CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC PEAPTFDNTIEAMERGGETLTRVSRIFFGLVQADTSDARQKIQEEIAPKLAAHQDEINLD CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC PKLFARVKTIYDQRDTLNLDPEQKRLVERDYEELVRAGAQLSDADKDSLRKLNVEETTLS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHH TQFHTRLVAASAAGAVVVDDKAKLDGLSEGDIAAAADAAKARKLDGKYLLTLQNTTQQPV HHHHHHHHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHH LASLKNRELRAEVLKASETRAEKGDANDTRQTIQRLAQLRAQKAKLLGFDNYAAYSLGDQ HHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH MAKTPDAALKLLTDTVPAATAKARREAAEMQKVIDAQKGGFKLAASDWDVYAEQVRKAKY HHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC DLDESQIKPYFELDNVLNNGVFYAATQLYGITFKQRTDIPTYHADMKVYEVFDADGTSMA CCCHHHCCCHHHHHHHHHCCCEEEEHHHHEEEECCCCCCCCEECCCEEEEEECCCCCEEE LFYTDYFKRDSKSGGAWMDVFVEQDGLTGAKPVVYNVCNFTKPAAGQPALLSFDDVTTLF EEEEHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCEECHHHHHHHH HEFGHALHGMFSKVKYPSIAGTSTSRDFVEFPSQFNEHWASDPKVFANYAKHYQTGAAMP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH AELVEKIKKAKTFNSGYATTEYLSAALLDLAWHTQPADAPLQDVSKFEADALKRFKVDLA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH EVPPRYRSSYFDHIWGGGYSAGYYAYFWSEVLDDDAFEWFKENGGLTRKNGDTFRAKILS HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHH RGNTVDLATLYRDFRGKDPSVKALLENRGLTE CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCC >Mature Secondary Structure PEKTAPAPAADAASNPLLTASTLPFQAPPFDKIQDADYLPAFEEGMRQHLADIRKIADN CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC PEAPTFDNTIEAMERGGETLTRVSRIFFGLVQADTSDARQKIQEEIAPKLAAHQDEINLD CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC PKLFARVKTIYDQRDTLNLDPEQKRLVERDYEELVRAGAQLSDADKDSLRKLNVEETTLS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHH TQFHTRLVAASAAGAVVVDDKAKLDGLSEGDIAAAADAAKARKLDGKYLLTLQNTTQQPV HHHHHHHHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHH LASLKNRELRAEVLKASETRAEKGDANDTRQTIQRLAQLRAQKAKLLGFDNYAAYSLGDQ HHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH MAKTPDAALKLLTDTVPAATAKARREAAEMQKVIDAQKGGFKLAASDWDVYAEQVRKAKY HHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC DLDESQIKPYFELDNVLNNGVFYAATQLYGITFKQRTDIPTYHADMKVYEVFDADGTSMA CCCHHHCCCHHHHHHHHHCCCEEEEHHHHEEEECCCCCCCCEECCCEEEEEECCCCCEEE LFYTDYFKRDSKSGGAWMDVFVEQDGLTGAKPVVYNVCNFTKPAAGQPALLSFDDVTTLF EEEEHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCEECHHHHHHHH HEFGHALHGMFSKVKYPSIAGTSTSRDFVEFPSQFNEHWASDPKVFANYAKHYQTGAAMP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH AELVEKIKKAKTFNSGYATTEYLSAALLDLAWHTQPADAPLQDVSKFEADALKRFKVDLA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH EVPPRYRSSYFDHIWGGGYSAGYYAYFWSEVLDDDAFEWFKENGGLTRKNGDTFRAKILS HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHH RGNTVDLATLYRDFRGKDPSVKALLENRGLTE CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]