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The map label for this gene is ycdC [C]

Identifier: 21241025

GI number: 21241025

Start: 299947

End: 300579

Strand: Direct

Name: ycdC [C]

Synonym: XAC0251

Alternate gene names: 21241025

Gene position: 299947-300579 (Clockwise)

Preceding gene: 21241023

Following gene: 21241030

Centisome position: 5.8

GC content: 66.98

Gene sequence:

>633_bases
ATGTCGACCGCACCCTCCCTTCCGGCCAAGCCCCAGCGCCTGACCGACCGCAAACGCAACGCCATCGTCGAGGCCGCCAT
TGCCGAGTTCCGGCAGCACGGCTTCGAAGCGACCAGCATGGACCGTGTAGCCGCCACTGCCGGCGTTTCCAAACGCACGG
TCTATAACCACTTCCCCAGCAAGGACGCCTTGTTCGGCGAGATTTTGCGCGGGCTGTGGCAACGCAGCGCCGAGGCGGTG
AATCTGGCGTATCGGCCCGATCAACCGCTGCACCTGCAGTTGATCGCCTTGCTGCAACAGAAGCTGCGGCTGTTGGACGA
CCCGGCGTTCATCGATCTGTCGCGCGTGGCCATCGCCGAAGGCATCCACTCGCCGGCGCGGGCGCGCGAGTTGCTGTCGC
AGCTGGGCAGCAAGGAAGAGGGCACCACCACCTGGCTGCGTGCCGCACTGGCCGACGGCCGGCTGACAGGCGTGGAGCCG
GACTTCGCCGCGCAGCAGTTGCAGGCGCTGGTGAAGGGCTTTGCGTTCTGGCCGCAGATCACCCTGGGCCAGCCGCCGCT
GTCGCCGCAGCAACAGACGCAGGTGGCCGAATCGGCGGTGGCGATGTTCCTGGGGTTGTACGCGCGCAAGTGA

Upstream 100 bases:

>100_bases
CGGGATGACAACGGCGGATCACACCAGTGCCAGGAGAGATTACACTGGACAGTGTAGTTTTATTTTCGTGAAAGTAAACT
GCCAGGTGTAAAATCGCCAG

Downstream 100 bases:

>100_bases
GCACGCGTCGGCACGCTCGCTTGCGCGTTTAGGGCGGCAACCGAACGTAGCGAGCAGTCGTCGGGTGGGCACGCCGGCGC
ACTCAGAGGCGCAATGGACG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSTAPSLPAKPQRLTDRKRNAIVEAAIAEFRQHGFEATSMDRVAATAGVSKRTVYNHFPSKDALFGEILRGLWQRSAEAV
NLAYRPDQPLHLQLIALLQQKLRLLDDPAFIDLSRVAIAEGIHSPARARELLSQLGSKEEGTTTWLRAALADGRLTGVEP
DFAAQQLQALVKGFAFWPQITLGQPPLSPQQQTQVAESAVAMFLGLYARK

Sequences:

>Translated_210_residues
MSTAPSLPAKPQRLTDRKRNAIVEAAIAEFRQHGFEATSMDRVAATAGVSKRTVYNHFPSKDALFGEILRGLWQRSAEAV
NLAYRPDQPLHLQLIALLQQKLRLLDDPAFIDLSRVAIAEGIHSPARARELLSQLGSKEEGTTTWLRAALADGRLTGVEP
DFAAQQLQALVKGFAFWPQITLGQPPLSPQQQTQVAESAVAMFLGLYARK
>Mature_209_residues
STAPSLPAKPQRLTDRKRNAIVEAAIAEFRQHGFEATSMDRVAATAGVSKRTVYNHFPSKDALFGEILRGLWQRSAEAVN
LAYRPDQPLHLQLIALLQQKLRLLDDPAFIDLSRVAIAEGIHSPARARELLSQLGSKEEGTTTWLRAALADGRLTGVEPD
FAAQQLQALVKGFAFWPQITLGQPPLSPQQQTQVAESAVAMFLGLYARK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23094; Mature: 22963

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAPSLPAKPQRLTDRKRNAIVEAAIAEFRQHGFEATSMDRVAATAGVSKRTVYNHFPS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCC
KDALFGEILRGLWQRSAEAVNLAYRPDQPLHLQLIALLQQKLRLLDDPAFIDLSRVAIAE
CHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIHSPARARELLSQLGSKEEGTTTWLRAALADGRLTGVEPDFAAQQLQALVKGFAFWPQI
HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
TLGQPPLSPQQQTQVAESAVAMFLGLYARK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STAPSLPAKPQRLTDRKRNAIVEAAIAEFRQHGFEATSMDRVAATAGVSKRTVYNHFPS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCC
KDALFGEILRGLWQRSAEAVNLAYRPDQPLHLQLIALLQQKLRLLDDPAFIDLSRVAIAE
CHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIHSPARARELLSQLGSKEEGTTTWLRAALADGRLTGVEPDFAAQQLQALVKGFAFWPQI
HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
TLGQPPLSPQQQTQVAESAVAMFLGLYARK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA