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The map label for this gene is lgtB [H]

Identifier: 21240991

GI number: 21240991

Start: 265555

End: 266364

Strand: Direct

Name: lgtB [H]

Synonym: XAC0217

Alternate gene names: 21240991

Gene position: 265555-266364 (Clockwise)

Preceding gene: 21240987

Following gene: 21240992

Centisome position: 5.13

GC content: 63.09

Gene sequence:

>810_bases
GTGATCAAGTCCTACCTTATCAATATGCAGCGCAGCGGCGACCGGCTGCAGGCCATGTCGGCGCGCTTGGATGCGCTGGG
CCTGCCGTTCGAGCGCATTGCTGCCGTCGATGGCGCCACGTTGACGGACGAGCAGATCGCCGACTTCGTACGCGAGCGTC
CACTGGAAGGGTCGGGCGATGCCTTCAGCACCGGCCCACGCAAGTGGACAGCGTCCAACATCGGCTGCTTTCTCAGTCAT
CAGGCAGCGTGGCGCATTGCGGCCGATTCCGACGACGCCTACACGGCGATTTTCGAAGACGACATGCATCTGTCCGATGC
GCTGCCGGCGCTATTGCGCAGCACCGATTGGCTGCCCGGCGGCAACAGCATCGTGCGGCTGGAGCCGTCCTACAACCGCA
TCAAGCTCGATGCCAAAGTGGCGGATGTCGCCGGGCGCCATCTGCGCCTGGTGCGGCCATCGAGGTATCAGCATTGTTGG
CCGGTGTGCGCCGGCGCGCTGATCATCAGCAGGGATGCGGCGCGATTGCTGCTGGCTGCAAAGGCGCGCTGGCACACCAT
GGCCGATATTTTTTTGTTCGGGTGGAGCGAGTCGCCAGTGGCGCACCAGCTGTCCACCTATCAACTCTCGCCGGCTGCGT
GCATCCAGGACAAGTTCTTCCACGCAGCTGCGGAAAACATCGTATTTACCAGCACGATCGATGCGCCGCTGACGCACGCA
CAGAAGCAGCGCAGTACGCATTGGAAAGCCAGGGCCACCGCGCTGTTGCGGGTGGCGCAGGGCTATCGCAAGGTGGTCTT
TGCGCCATAG

Upstream 100 bases:

>100_bases
TTGGCACCCTGACTGGCGCCCTTCGACTCGATCCAGAACCTCTTGCAACCGCTGGGAATCCGGTCACGATCCTGGCCAAC
AACCGTGCTGGAGCGGCGAA

Downstream 100 bases:

>100_bases
CGCGGCAAACAAACCGGCGCGCGCAGGCGTCGGTTCTGCCTGGCGGTTGCGCGGTCGTTGGCTGGCGGTTTTATGCATGG
CGCGCTATCTGCAACGCCAC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MIKSYLINMQRSGDRLQAMSARLDALGLPFERIAAVDGATLTDEQIADFVRERPLEGSGDAFSTGPRKWTASNIGCFLSH
QAAWRIAADSDDAYTAIFEDDMHLSDALPALLRSTDWLPGGNSIVRLEPSYNRIKLDAKVADVAGRHLRLVRPSRYQHCW
PVCAGALIISRDAARLLLAAKARWHTMADIFLFGWSESPVAHQLSTYQLSPAACIQDKFFHAAAENIVFTSTIDAPLTHA
QKQRSTHWKARATALLRVAQGYRKVVFAP

Sequences:

>Translated_269_residues
MIKSYLINMQRSGDRLQAMSARLDALGLPFERIAAVDGATLTDEQIADFVRERPLEGSGDAFSTGPRKWTASNIGCFLSH
QAAWRIAADSDDAYTAIFEDDMHLSDALPALLRSTDWLPGGNSIVRLEPSYNRIKLDAKVADVAGRHLRLVRPSRYQHCW
PVCAGALIISRDAARLLLAAKARWHTMADIFLFGWSESPVAHQLSTYQLSPAACIQDKFFHAAAENIVFTSTIDAPLTHA
QKQRSTHWKARATALLRVAQGYRKVVFAP
>Mature_269_residues
MIKSYLINMQRSGDRLQAMSARLDALGLPFERIAAVDGATLTDEQIADFVRERPLEGSGDAFSTGPRKWTASNIGCFLSH
QAAWRIAADSDDAYTAIFEDDMHLSDALPALLRSTDWLPGGNSIVRLEPSYNRIKLDAKVADVAGRHLRLVRPSRYQHCW
PVCAGALIISRDAARLLLAAKARWHTMADIFLFGWSESPVAHQLSTYQLSPAACIQDKFFHAAAENIVFTSTIDAPLTHA
QKQRSTHWKARATALLRVAQGYRKVVFAP

Specific function: Adds the second galactose to the lacto-N-tetraose chain in lipooligosaccharide (LOS) [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 29831; Mature: 29831

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSYLINMQRSGDRLQAMSARLDALGLPFERIAAVDGATLTDEQIADFVRERPLEGSGD
CCCHHEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
AFSTGPRKWTASNIGCFLSHQAAWRIAADSDDAYTAIFEDDMHLSDALPALLRSTDWLPG
CCCCCCCEEECCCCCEEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
GNSIVRLEPSYNRIKLDAKVADVAGRHLRLVRPSRYQHCWPVCAGALIISRDAARLLLAA
CCCEEEECCCCCEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEECHHHHHHHHH
KARWHTMADIFLFGWSESPVAHQLSTYQLSPAACIQDKFFHAAAENIVFTSTIDAPLTHA
HHHHHEEEEEEEECCCCCCHHHHHHHEECCHHHHHHHHHHHHHHCCEEEEEECCCHHHHH
QKQRSTHWKARATALLRVAQGYRKVVFAP
HHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MIKSYLINMQRSGDRLQAMSARLDALGLPFERIAAVDGATLTDEQIADFVRERPLEGSGD
CCCHHEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
AFSTGPRKWTASNIGCFLSHQAAWRIAADSDDAYTAIFEDDMHLSDALPALLRSTDWLPG
CCCCCCCEEECCCCCEEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
GNSIVRLEPSYNRIKLDAKVADVAGRHLRLVRPSRYQHCWPVCAGALIISRDAARLLLAA
CCCEEEECCCCCEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEECHHHHHHHHH
KARWHTMADIFLFGWSESPVAHQLSTYQLSPAACIQDKFFHAAAENIVFTSTIDAPLTHA
HHHHHEEEEEEEECCCCCCHHHHHHHEECCHHHHHHHHHHHHHHCCEEEEEECCCHHHHH
QKQRSTHWKARATALLRVAQGYRKVVFAP
HHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7964493 [H]