Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226626
Identifier: 21226626
GI number: 21226626
Start: 651915
End: 653207
Strand: Reverse
Name: 21226626
Synonym: MM_0524
Alternate gene names: NA
Gene position: 653207-651915 (Counterclockwise)
Preceding gene: 21226627
Following gene: 21226625
Centisome position: 15.95
GC content: 49.27
Gene sequence:
>1293_bases ATGCGTCTGGTCCAGGTGCTTATACCCGAAGGGAAACGCGAGTCTGTCTTGAGCGTTCTTGATAATGAACAGATCGACTA TGCTGTCTGGGATGAAACAGGAAGAGGGGATTTCGAAGCTCTTGTTCAGTTCCCTATTCCCTCCATAGGCGTCGAGCCCA TACTTGACAAACTCCGCGAAGCCGGGGTAATTAGGGGAGTTTACACCATAGTATTGTCTCCTGAAACGGTAATTTCCGAG CATATAGATATGCTGAAGAGCCGGTATGCAGGGGAACGTATTTCAAGGGAAGAACTGATTGCGCGTGCACGGAGCCTTGC ACCTGCAGCTTCAACCTATTTTGCTTTTCTGATCCTGAGCACGATCATTGCAACTGCCGGGCTTTTGCTAGATTCGGCTG CGACGATTATAGGGGCAATGGTAGTGGCTCCGTTGATGGGACCTGCAATAACTGCCAGTGTCGGGACGGTTGTGGATGAC AGGAAGCTTGCCTCTCGAGGAGTAGTGCTTCAGGTCACAGGTCTCGTGATGGCAATTGCAGTTTCTGCACTCGTAGGTTT CTTTATCAAGGAATCTTTCTTCCTGCCTCCTGGCCTCGATATTCGGGATGTGACCCAGATTGCTGAACGCATAAGCCCCA ATTTCCTTTATGTGTTGCTTGCCCTGGGGTCCGGCCTTGCAGGCGCTATCAGCGTAATTCGAAACGTAGGATCTGCTCTT GTAGGAGTTGCCATCGCCATTGCTCTTATCCCTCCTGCCGCAACATCAGGGCTTGGAATTGCATGGGGACTGCCTGGGGT GGCTCTTGCTGCTGCTTTGCTTGTGGTCATCAACATGCTTGCAGTCAATGTCTCTACACTTGTCCTGTTCTGGCTTTCCG GGTTCAGGCCGCCTGAATTCTCTGCAATCAACCATGCACGTTATGCCGTGATCTCCCGCAGTGCTCTTCTCCTTATTGCA ATCACCATTCTTTCTGTAGTTCTGATCCTTGTCAGTTTTTCATCCTACCAGACCTATGTAATTGAACAGAAGGTGAACGA GGAAGTCAATTACATGTTTGAAGAGCCCATGTACAGTGGAATTGGGCTGACACCTGTCGAAGTCTCTATAGGTTACGACT CTGGCAATATCCTTTTAGAAGAACCTGTAAGGGTTGATATTGTTGTGGCCCATCCTGCAGCACAGGAAGTCCCGGAGGAT ATTGCAATTCAAATAGACAGACGCCTCACTGAGGCTATAAATAGAAATTTCGAGGTCAGAGTCGGTTTCGTTGAGACTCA GCAGACTGCATAA
Upstream 100 bases:
>100_bases ATGGCTCCCGGGTGTTTTTTCCGGAACAATTCTTACTCTGCGCGGGTTAATACCGATTATTCTTTACAATTCATATATCC AGACAGCTTTATATTATATC
Downstream 100 bases:
>100_bases AATTCGTTATTTTTGTGTAATTTAAAGCGAGAAGATGGGAGTGAAAAGATAGACGAGCCTGCTTTTTACTGCTGTGCCCA GAATTTTATTGATCGAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MRLVQVLIPEGKRESVLSVLDNEQIDYAVWDETGRGDFEALVQFPIPSIGVEPILDKLREAGVIRGVYTIVLSPETVISE HIDMLKSRYAGERISREELIARARSLAPAASTYFAFLILSTIIATAGLLLDSAATIIGAMVVAPLMGPAITASVGTVVDD RKLASRGVVLQVTGLVMAIAVSALVGFFIKESFFLPPGLDIRDVTQIAERISPNFLYVLLALGSGLAGAISVIRNVGSAL VGVAIAIALIPPAATSGLGIAWGLPGVALAAALLVVINMLAVNVSTLVLFWLSGFRPPEFSAINHARYAVISRSALLLIA ITILSVVLILVSFSSYQTYVIEQKVNEEVNYMFEEPMYSGIGLTPVEVSIGYDSGNILLEEPVRVDIVVAHPAAQEVPED IAIQIDRRLTEAINRNFEVRVGFVETQQTA
Sequences:
>Translated_430_residues MRLVQVLIPEGKRESVLSVLDNEQIDYAVWDETGRGDFEALVQFPIPSIGVEPILDKLREAGVIRGVYTIVLSPETVISE HIDMLKSRYAGERISREELIARARSLAPAASTYFAFLILSTIIATAGLLLDSAATIIGAMVVAPLMGPAITASVGTVVDD RKLASRGVVLQVTGLVMAIAVSALVGFFIKESFFLPPGLDIRDVTQIAERISPNFLYVLLALGSGLAGAISVIRNVGSAL VGVAIAIALIPPAATSGLGIAWGLPGVALAAALLVVINMLAVNVSTLVLFWLSGFRPPEFSAINHARYAVISRSALLLIA ITILSVVLILVSFSSYQTYVIEQKVNEEVNYMFEEPMYSGIGLTPVEVSIGYDSGNILLEEPVRVDIVVAHPAAQEVPED IAIQIDRRLTEAINRNFEVRVGFVETQQTA >Mature_430_residues MRLVQVLIPEGKRESVLSVLDNEQIDYAVWDETGRGDFEALVQFPIPSIGVEPILDKLREAGVIRGVYTIVLSPETVISE HIDMLKSRYAGERISREELIARARSLAPAASTYFAFLILSTIIATAGLLLDSAATIIGAMVVAPLMGPAITASVGTVVDD RKLASRGVVLQVTGLVMAIAVSALVGFFIKESFFLPPGLDIRDVTQIAERISPNFLYVLLALGSGLAGAISVIRNVGSAL VGVAIAIALIPPAATSGLGIAWGLPGVALAAALLVVINMLAVNVSTLVLFWLSGFRPPEFSAINHARYAVISRSALLLIA ITILSVVLILVSFSSYQTYVIEQKVNEEVNYMFEEPMYSGIGLTPVEVSIGYDSGNILLEEPVRVDIVVAHPAAQEVPED IAIQIDRRLTEAINRNFEVRVGFVETQQTA
Specific function: Unknown
COG id: COG1808
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI19921100, Length=193, Percent_Identity=33.160621761658, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI20129117, Length=181, Percent_Identity=32.5966850828729, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364738, Length=339, Percent_Identity=22.1238938053097, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005233 - InterPro: IPR013031 - InterPro: IPR005240 [H]
Pfam domain/function: PF04087 DUF389 [H]
EC number: NA
Molecular weight: Translated: 46076; Mature: 46076
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVQVLIPEGKRESVLSVLDNEQIDYAVWDETGRGDFEALVQFPIPSIGVEPILDKLRE CCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHH AGVIRGVYTIVLSPETVISEHIDMLKSRYAGERISREELIARARSLAPAASTYFAFLILS CCHHEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH TIIATAGLLLDSAATIIGAMVVAPLMGPAITASVGTVVDDRKLASRGVVLQVTGLVMAIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCEEEEHHHHHHHHH VSALVGFFIKESFFLPPGLDIRDVTQIAERISPNFLYVLLALGSGLAGAISVIRNVGSAL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH VGVAIAIALIPPAATSGLGIAWGLPGVALAAALLVVINMLAVNVSTLVLFWLSGFRPPEF HHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SAINHARYAVISRSALLLIAITILSVVLILVSFSSYQTYVIEQKVNEEVNYMFEEPMYSG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCHHHHHHHHCCCCCC IGLTPVEVSIGYDSGNILLEEPVRVDIVVAHPAAQEVPEDIAIQIDRRLTEAINRNFEVR CCCCEEEEEEEECCCCEEEECCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEE VGFVETQQTA EEEEECCCCC >Mature Secondary Structure MRLVQVLIPEGKRESVLSVLDNEQIDYAVWDETGRGDFEALVQFPIPSIGVEPILDKLRE CCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHH AGVIRGVYTIVLSPETVISEHIDMLKSRYAGERISREELIARARSLAPAASTYFAFLILS CCHHEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH TIIATAGLLLDSAATIIGAMVVAPLMGPAITASVGTVVDDRKLASRGVVLQVTGLVMAIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCEEEEHHHHHHHHH VSALVGFFIKESFFLPPGLDIRDVTQIAERISPNFLYVLLALGSGLAGAISVIRNVGSAL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH VGVAIAIALIPPAATSGLGIAWGLPGVALAAALLVVINMLAVNVSTLVLFWLSGFRPPEF HHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SAINHARYAVISRSALLLIAITILSVVLILVSFSSYQTYVIEQKVNEEVNYMFEEPMYSG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCHHHHHHHHCCCCCC IGLTPVEVSIGYDSGNILLEEPVRVDIVVAHPAAQEVPEDIAIQIDRRLTEAINRNFEVR CCCCEEEEEEEECCCCEEEECCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEE VGFVETQQTA EEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]