| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226343
Identifier: 21226343
GI number: 21226343
Start: 323172
End: 324674
Strand: Reverse
Name: 21226343
Synonym: MM_0241
Alternate gene names: NA
Gene position: 324674-323172 (Counterclockwise)
Preceding gene: 21226345
Following gene: 21226342
Centisome position: 7.93
GC content: 47.17
Gene sequence:
>1503_bases ATGGTAAAAAAATCAATTCATGAGATTAATAAAAAAATTGAAGATGGGAGCGTCAATGTAGTCACAGCCGAAGAAATGGT TGGAATTGTTGAAGACCTCGGCGTGGAAAGTGCTGCGAAAGAAGTGGATGTGGTGACAACAGGCACTTTCGGAGCCATGT GCTCATCAGGTTTGATGCTCAATCTGGGTCATTCAGAACCCCCGATTAAAATTCAGAAATTATGGTTCAATAATGTTGAG GCGTACAGCGGGATTGCTGCTGTTGATGCTTACCTCGGAGCTGCCCAGATCTCGGACACACGCGGGATTCAGTATGGAGG AGCACACGTTATTGAAGACCTTCTCAGGGGAAAAGAAATCAATGTTCATGCAACTTCCTACGGGACAGACTGCTACCCGA GAAAAGTGCTTGATACGGCGATCACCCTTGAAGACTTAAACGAAGCCGTTCTTCTCAACCCCAGGAACGCATACCAGAAA TACAACGCTGCAACAAACAGTTCTAAAAGGATCCTGAATACTTATATGGGTGAGCTTCTGCCCAACTTCGGAAACGTCAC TTATTCCGGAGCAGGAGTGCTTTCTCCCCTGTCAAACGACCCGGGATATGAAACTATAGGAACAGGCACAAGGATTTTTC TTGGAGGTGCGCAGGGTTATGTCATAGGCAACGGGACTCAGCATTCCCCATCCGGAAGTTTTGGAACCCTCATGCTTAAA GGGAACCTTAAGGAAATGAGCCCTGATTATTTAAGAGCCGCCTCTTTTGCAGGTTACGGGACAACCCTTTACATGGGAAT CGGGATTCCTATTCCTATCCTGAATGAAAAGCTTGCAGCTGCAACTGCAGTACGTGACGAGGACATCACCACCAGTGTGC TTGACTATGCTATCGGAAGCAGGGACAAGCCTGTGGTCAGGCAGGTAAATTATGCCGAACTCAGATCTGGATCTGTGCAG ATTGAAGGAAAGGATGTTCCAACATCTTCCCTTTCAAGCTTCAAGAACGCCAGAAAGATTGCAAATGAGCTGAAGGAATG GGTAAAACACGGAAAGTTCTTTGTCAGCATGCCTGTGGAAAAGCTTTGCAGTGAAGGCTCGGCAAAGCCCATGAAGCAGA CTCAGGCAGTGCCTCTTGTAAAAGACGTTATGTCCGATTTCATCGTCACTATCAAAAAGGATCAGACTGTCCAGGACGCT GCAAAGAAAATCTGGGAGAACTCTTTCAACCACCTTGCAGTAGTTTCGGATACCGGTGAACTTGTAGGGATCCTCACAGC CTGGGATATCTCAAAGGCAGTCGCGGAAAACATTTTCGATTCCGTAGAAAGCGTTATGACGAAAAAGGTCCTTACCTGCG CCCCTAACGAACCTGTGGACCTTGCAGCCCGCAGGCTTGACCGCTACGGAGTTTCAGCAATGCCGGTGATTGATGCGCAG AAGAAAGTACTCGGAATTATCACAAGCGACAATATAAGCAAGCTCTTTGCAAGGAGGTACTGA
Upstream 100 bases:
>100_bases TTATTATAGAGCTGCTTGTTACCCCCGGGATTATCACAAGTAATATATAATTCTGGCAAAAATTACCATCTAGATAAGTT TATAGCAAGAGGAAACCCGT
Downstream 100 bases:
>100_bases GCATGAAAATAAAGATCTGCATCCCTACTGAAAGGATACATAACCCAATTATCTCCGAGTCCATCATAGAAACAGGGATC CTGCTTAATATTATGGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MVKKSIHEINKKIEDGSVNVVTAEEMVGIVEDLGVESAAKEVDVVTTGTFGAMCSSGLMLNLGHSEPPIKIQKLWFNNVE AYSGIAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKEINVHATSYGTDCYPRKVLDTAITLEDLNEAVLLNPRNAYQK YNAATNSSKRILNTYMGELLPNFGNVTYSGAGVLSPLSNDPGYETIGTGTRIFLGGAQGYVIGNGTQHSPSGSFGTLMLK GNLKEMSPDYLRAASFAGYGTTLYMGIGIPIPILNEKLAAATAVRDEDITTSVLDYAIGSRDKPVVRQVNYAELRSGSVQ IEGKDVPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVEKLCSEGSAKPMKQTQAVPLVKDVMSDFIVTIKKDQTVQDA AKKIWENSFNHLAVVSDTGELVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDAQ KKVLGIITSDNISKLFARRY
Sequences:
>Translated_500_residues MVKKSIHEINKKIEDGSVNVVTAEEMVGIVEDLGVESAAKEVDVVTTGTFGAMCSSGLMLNLGHSEPPIKIQKLWFNNVE AYSGIAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKEINVHATSYGTDCYPRKVLDTAITLEDLNEAVLLNPRNAYQK YNAATNSSKRILNTYMGELLPNFGNVTYSGAGVLSPLSNDPGYETIGTGTRIFLGGAQGYVIGNGTQHSPSGSFGTLMLK GNLKEMSPDYLRAASFAGYGTTLYMGIGIPIPILNEKLAAATAVRDEDITTSVLDYAIGSRDKPVVRQVNYAELRSGSVQ IEGKDVPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVEKLCSEGSAKPMKQTQAVPLVKDVMSDFIVTIKKDQTVQDA AKKIWENSFNHLAVVSDTGELVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDAQ KKVLGIITSDNISKLFARRY >Mature_500_residues MVKKSIHEINKKIEDGSVNVVTAEEMVGIVEDLGVESAAKEVDVVTTGTFGAMCSSGLMLNLGHSEPPIKIQKLWFNNVE AYSGIAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKEINVHATSYGTDCYPRKVLDTAITLEDLNEAVLLNPRNAYQK YNAATNSSKRILNTYMGELLPNFGNVTYSGAGVLSPLSNDPGYETIGTGTRIFLGGAQGYVIGNGTQHSPSGSFGTLMLK GNLKEMSPDYLRAASFAGYGTTLYMGIGIPIPILNEKLAAATAVRDEDITTSVLDYAIGSRDKPVVRQVNYAELRSGSVQ IEGKDVPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVEKLCSEGSAKPMKQTQAVPLVKDVMSDFIVTIKKDQTVQDA AKKIWENSFNHLAVVSDTGELVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDAQ KKVLGIITSDNISKLFARRY
Specific function: Unknown
COG id: COG1900
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR002708 - InterPro: IPR016426 - ProDom: PD011569 [H]
Pfam domain/function: PF00571 CBS; PF01837 DUF39 [H]
EC number: NA
Molecular weight: Translated: 54051; Mature: 54051
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKKSIHEINKKIEDGSVNVVTAEEMVGIVEDLGVESAAKEVDVVTTGTFGAMCSSGLML CCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHCCEEEEECCCHHHHHCCCCEE NLGHSEPPIKIQKLWFNNVEAYSGIAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKEI ECCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE NVHATSYGTDCYPRKVLDTAITLEDLNEAVLLNPRNAYQKYNAATNSSKRILNTYMGELL EEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHC PNFGNVTYSGAGVLSPLSNDPGYETIGTGTRIFLGGAQGYVIGNGTQHSPSGSFGTLMLK CCCCCEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEE GNLKEMSPDYLRAASFAGYGTTLYMGIGIPIPILNEKLAAATAVRDEDITTSVLDYAIGS CCHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHCHHHHHHHHHCCCCHHHHHHHHHHCC RDKPVVRQVNYAELRSGSVQIEGKDVPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVE CCCCHHHCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH KLCSEGSAKPMKQTQAVPLVKDVMSDFIVTIKKDQTVQDAAKKIWENSFNHLAVVSDTGE HHHCCCCCCCHHHHHCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCC LVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDAQ EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCC KKVLGIITSDNISKLFARRY CCEEEEEECCCHHHHHHHCC >Mature Secondary Structure MVKKSIHEINKKIEDGSVNVVTAEEMVGIVEDLGVESAAKEVDVVTTGTFGAMCSSGLML CCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHCCEEEEECCCHHHHHCCCCEE NLGHSEPPIKIQKLWFNNVEAYSGIAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKEI ECCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE NVHATSYGTDCYPRKVLDTAITLEDLNEAVLLNPRNAYQKYNAATNSSKRILNTYMGELL EEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHC PNFGNVTYSGAGVLSPLSNDPGYETIGTGTRIFLGGAQGYVIGNGTQHSPSGSFGTLMLK CCCCCEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEE GNLKEMSPDYLRAASFAGYGTTLYMGIGIPIPILNEKLAAATAVRDEDITTSVLDYAIGS CCHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHCHHHHHHHHHCCCCHHHHHHHHHHCC RDKPVVRQVNYAELRSGSVQIEGKDVPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVE CCCCHHHCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH KLCSEGSAKPMKQTQAVPLVKDVMSDFIVTIKKDQTVQDAAKKIWENSFNHLAVVSDTGE HHHCCCCCCCHHHHHCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCC LVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDAQ EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCC KKVLGIITSDNISKLFARRY CCEEEEEECCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]