Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226340
Identifier: 21226340
GI number: 21226340
Start: 320656
End: 321381
Strand: Direct
Name: 21226340
Synonym: MM_0238
Alternate gene names: NA
Gene position: 320656-321381 (Clockwise)
Preceding gene: 21226338
Following gene: 21226344
Centisome position: 7.83
GC content: 45.73
Gene sequence:
>726_bases ATGGGCTGCTACTTATTGGAAGATTTTATCAAAAGTATGGGAGAAAGAGCCCCTGGGCAGGAAAATTTTGAACTTGAACG GGACCATCTGCTGCGAGCGAATCTTAGAGGTGCGGTATGGACCAGGATAGGATCCATGGTGGCATATACCGGAAACATAA AGTTTACACGGGAAGAAGCTCTCGAACACGGGATTAGCAGAAAGGTAAAAATATCCCTTGCAGGAGAAGGTGTCAGTTTT ATAAAAGCCGAAGGGGTGGGAAAGCTTTTCCTTGCAGATAGAGGAAAGAAAGTCTCAATTCTGAAACTTGAAAATAACTC GATCTGCGTAAACTTCAATGATATCCTCACCATTGAAGACTCCATTAGCTGGGACATCAGGATGATTAGAAAGCTTTCAG GGATAACGGAAAAAGAGATTTACAATGTAAAACTTGAGGGAACCGGCGTATTCGCCATTACCACTCACAATGAGCCCCTG GTCTTCAGAGTGACCGGAGAGCGCCCTCTATTCACCGACCCTGGCGCCACAGTTGCCTGGACAGGGAACATGGAGCCGGA AATAAAAAGCGATATCTCCCTGAAAACTATTGTAGGAAGAAGCACAGGGGAATCCGCCCAGATGGTCTTCAGAGGAGAAG GGTTTGTGGTGGTACAGCCCTGCGAAGAAATTAATTCCCAGGAAAAAAATGAAAAAGGCGTCTCGAACGTGAACGTTTAT ACCTGA
Upstream 100 bases:
>100_bases CTGAGATTAAAAAACACAGGAATACTTATTTATATTTATTGGAAACTATTAAACATTTAGACAATAATAAAAAAATAAAA ATATACCCAGAGGTAAAAAG
Downstream 100 bases:
>100_bases CGCACGTGAACGTTTTATACAGAACTCAGGTGAATGTTTATTTAATTCGCCGGAAGCTTTTTGCCCGGTAAAAGAAGGGA AGGCACGGGAAGGAGTGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MGCYLLEDFIKSMGERAPGQENFELERDHLLRANLRGAVWTRIGSMVAYTGNIKFTREEALEHGISRKVKISLAGEGVSF IKAEGVGKLFLADRGKKVSILKLENNSICVNFNDILTIEDSISWDIRMIRKLSGITEKEIYNVKLEGTGVFAITTHNEPL VFRVTGERPLFTDPGATVAWTGNMEPEIKSDISLKTIVGRSTGESAQMVFRGEGFVVVQPCEEINSQEKNEKGVSNVNVY T
Sequences:
>Translated_241_residues MGCYLLEDFIKSMGERAPGQENFELERDHLLRANLRGAVWTRIGSMVAYTGNIKFTREEALEHGISRKVKISLAGEGVSF IKAEGVGKLFLADRGKKVSILKLENNSICVNFNDILTIEDSISWDIRMIRKLSGITEKEIYNVKLEGTGVFAITTHNEPL VFRVTGERPLFTDPGATVAWTGNMEPEIKSDISLKTIVGRSTGESAQMVFRGEGFVVVQPCEEINSQEKNEKGVSNVNVY T >Mature_240_residues GCYLLEDFIKSMGERAPGQENFELERDHLLRANLRGAVWTRIGSMVAYTGNIKFTREEALEHGISRKVKISLAGEGVSFI KAEGVGKLFLADRGKKVSILKLENNSICVNFNDILTIEDSISWDIRMIRKLSGITEKEIYNVKLEGTGVFAITTHNEPLV FRVTGERPLFTDPGATVAWTGNMEPEIKSDISLKTIVGRSTGESAQMVFRGEGFVVVQPCEEINSQEKNEKGVSNVNVYT
Specific function: Unknown
COG id: COG2013
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26793; Mature: 26662
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCYLLEDFIKSMGERAPGQENFELERDHLLRANLRGAVWTRIGSMVAYTGNIKFTREEA CCCHHHHHHHHHHHHCCCCCCCCEECHHHEEHHCCCHHHHHHHCCEEEEECCEEEEHHHH LEHGISRKVKISLAGEGVSFIKAEGVGKLFLADRGKKVSILKLENNSICVNFNDILTIED HHCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCEEEEEC SISWDIRMIRKLSGITEKEIYNVKLEGTGVFAITTHNEPLVFRVTGERPLFTDPGATVAW CCCHHHHHHHHHCCCCCHHEEEEEECCCEEEEEEECCCCEEEEECCCCCEEECCCCEEEE TGNMEPEIKSDISLKTIVGRSTGESAQMVFRGEGFVVVQPCEEINSQEKNEKGVSNVNVY ECCCCCCHHCCCEEEEEEECCCCCCEEEEEECCCEEEECCHHHCCCCCCCCCCCCEEEEE T C >Mature Secondary Structure GCYLLEDFIKSMGERAPGQENFELERDHLLRANLRGAVWTRIGSMVAYTGNIKFTREEA CCHHHHHHHHHHHHCCCCCCCCEECHHHEEHHCCCHHHHHHHCCEEEEECCEEEEHHHH LEHGISRKVKISLAGEGVSFIKAEGVGKLFLADRGKKVSILKLENNSICVNFNDILTIED HHCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCEEEEEC SISWDIRMIRKLSGITEKEIYNVKLEGTGVFAITTHNEPLVFRVTGERPLFTDPGATVAW CCCHHHHHHHHHCCCCCHHEEEEEECCCEEEEEEECCCCEEEEECCCCCEEECCCCEEEE TGNMEPEIKSDISLKTIVGRSTGESAQMVFRGEGFVVVQPCEEINSQEKNEKGVSNVNVY ECCCCCCHHCCCEEEEEEECCCCCCEEEEEECCCEEEECCHHHCCCCCCCCCCCCEEEEE T C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA