Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226239
Identifier: 21226239
GI number: 21226239
Start: 171646
End: 171858
Strand: Direct
Name: 21226239
Synonym: MM_0137
Alternate gene names: NA
Gene position: 171646-171858 (Clockwise)
Preceding gene: 21226236
Following gene: 21226243
Centisome position: 4.19
GC content: 41.31
Gene sequence:
>213_bases GTGAGTAAAAAAGTACACATAACTATTCAAGCTGGAGAGATTGTCGAGCAGACCGTAGAAGTGGCTGAAACAGCCACCTA CGAAGACCTGCTTGATGAGCTGAACATAAATCAGGAAACAGTACTTGTATTAAATGGAGGGAATGCTGTTCCCCTTGATG GGGCTATAGGTTCTGATAAACTAACGATATTAAAAGTTGTAACAGGTGGATGA
Upstream 100 bases:
>100_bases ATGCAGAAAGGAAAGGCGTTAGAAAAGAATATGAACTGGAGCAGAAGTTAATAAAGGAAATCGTAGACGAAATTCAGGTA AGCGGCGGTGGAACACTAGA
Downstream 100 bases:
>100_bases TCTGCCCTTAAGGGCAGTGCCCCTTCTTTATTGAGACTTATTTTTCCCCCTTTTTAGAGAGATTTTAAAGGTTATTTTTC TGCAAGGTTATTTTTTTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 70; Mature: 69
Protein sequence:
>70_residues MSKKVHITIQAGEIVEQTVEVAETATYEDLLDELNINQETVLVLNGGNAVPLDGAIGSDKLTILKVVTGG
Sequences:
>Translated_70_residues MSKKVHITIQAGEIVEQTVEVAETATYEDLLDELNINQETVLVLNGGNAVPLDGAIGSDKLTILKVVTGG >Mature_69_residues SKKVHITIQAGEIVEQTVEVAETATYEDLLDELNINQETVLVLNGGNAVPLDGAIGSDKLTILKVVTGG
Specific function: Unknown
COG id: COG2104
COG function: function code H; Sulfur transfer protein involved in thiamine biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7377; Mature: 7246
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKVHITIQAGEIVEQTVEVAETATYEDLLDELNINQETVLVLNGGNAVPLDGAIGSDK CCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCC LTILKVVTGG EEEEEEEECC >Mature Secondary Structure SKKVHITIQAGEIVEQTVEVAETATYEDLLDELNINQETVLVLNGGNAVPLDGAIGSDK CCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCC LTILKVVTGG EEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA