Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
---|---|
Accession | NC_003901 |
Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21226233
Identifier: 21226233
GI number: 21226233
Start: 162643
End: 163413
Strand: Direct
Name: 21226233
Synonym: MM_0131
Alternate gene names: NA
Gene position: 162643-163413 (Clockwise)
Preceding gene: 21226231
Following gene: 21226234
Centisome position: 3.97
GC content: 42.02
Gene sequence:
>771_bases ATGCCTGAGAAGCCCGATAGACTGAGAGAAGAAGCAGTAAAACATTTTAACAGAACAATTGACCTGATGCAGGAAGGAAA GCCCGAAGAATCCCTTGAAGCGCTCCAGAAAGCTGAAAATGCCGCACAGGAAGCAAAAAGTGACGCTATTTTGTTCCACA CCTTAAAAGCGAGGGGTCAGATCCTTCAGTCCCTTGGCAGGCTTGAAGAAGCTCTGGATACTTACGTTTTTTCCTTAAAA ATCAGCTATAAACTGCTCTCAGAAGACCCGGGAAACGAACTCTATAAAGACACCATCCGTCTTAACCTCAACAATATCGG AAACCTCGGCAATATTTTTCAGAGAGCTGGCAACTTTATCCTATCGAAACAATGCTATGAGACCGGACTTGAGATCTGCC AGAAGCTTCTTGATTCCCACCCGGAAAACACCTTTTATCAAATGTATGCAGGAAATACCCTCAACAATCTCGGGGAACTG CTTTTTAGCGTGGGACAGATAGAAGAAGCAAAAGAAAAATACGAAAAAGCCCTGGAAATATATGAAAAGCTCCTTCAAAA CTACCCTGAAGATACGGAATACCTCTCAGATAAAGAAATGACCCTTAACAACCTTGGAATTCTCTTTTCTCAAAAAGAGC AAAAAGAAGCGGCAAAAAAGAACTTCAAAGAATCTCTTGAAATCCTGGAAATCCTGAGCAAAAAAGACCCCAGAGATCAG AAGCTCAAGGAAGAAATTAGCCTCAGGCGGGAAAAGCTTGAAAAGATTTGA
Upstream 100 bases:
>100_bases GTTTTTAATAATATATAAAAAGTTGGGAAAAGAAAGGAACAGGAAGAAAAAACGAATTCGATAACATAATCTATAAGGCA ATAAAAGTCCTTTTTTTAAT
Downstream 100 bases:
>100_bases AACATGATTTCTGAAGCAAATCGAATAAATCTTCAAAGAAACGTTTCTCTTTTTACATACATGAATTTTTTATATATAAG AGTTTATAAAACAAACATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLK ISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGEL LFSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ KLKEEISLRREKLEKI
Sequences:
>Translated_256_residues MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLK ISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGEL LFSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ KLKEEISLRREKLEKI >Mature_255_residues PEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLKI SYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELL FSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQK LKEEISLRREKLEKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29626; Mature: 29495
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQ CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ILQSLGRLEEALDTYVFSLKISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHCCCCHHHHHHHHHHHH LSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELLFSVGQIEEAKEKYEKALEI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH KLKEEISLRREKLEKI HHHHHHHHHHHHHHCC >Mature Secondary Structure PEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQ CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ILQSLGRLEEALDTYVFSLKISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHCCCCHHHHHHHHHHHH LSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELLFSVGQIEEAKEKYEKALEI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH KLKEEISLRREKLEKI HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA