The gene/protein map for NC_003901 is currently unavailable.
Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is dppF [H]

Identifier: 21226109

GI number: 21226109

Start: 7490

End: 8101

Strand: Direct

Name: dppF [H]

Synonym: MM_0007

Alternate gene names: 21226109

Gene position: 7490-8101 (Clockwise)

Preceding gene: 21226108

Following gene: 21226113

Centisome position: 0.18

GC content: 41.18

Gene sequence:

>612_bases
ATGTATCTTAAATGCGAGAATATAAGTTTCGGATACAAAAAAAACAGTCTGGTTTTAGATAATGTAAGTCTGTCTTTAAG
AAGCGGTGAGGTTCTGGGCCTTGTAGGAGACAGCGGAAGTGGAAAATCAACCCTGTGTAAAATCCTTGCTGGCTATGAAA
ACAAATATCAGGGAAAAGTAAGCCTCGACGGAAAAGAAATTCCATCAAAAGGATATAACCCTGTCCAGCTCATATTCCAG
CATCCGGAAAAGGCTGTAAACCCGAAATGGAAAATGAAAGATATTTTAAATGAGGGACATAACGTTCCGCAGGAGATTCT
GGACTCATTCGGGATAAAAAAAGGCTGGCTTAACCGCTGGCCAAATGAGCTTTCGGGAGGAGAGCTTCAGAGGTTTGCAC
TTGCAAGAGCTCTGGGGTCTGAAACTAAATTTTTAATAGCGGATGAAATAACCACGATGCTGGACGCTATTACTCAGGCT
CAGATATGGAACACGGTTCTGGAGATAGTTAAAGAGAGGAATATCGGAGTACTGGTCGTAAGCCACGAGAAAAATTTGAT
CAAAAAGTTATGTCACGATGTTGTTTATTTAAAGGATGTGAACAGGGTCTGA

Upstream 100 bases:

>100_bases
GGATGTATTTTTTACGACAGGTGCTCAAAAAAGAACGAACTCTGCTCTAAAGGCATTCCTCAATTTCAAAATGTCAATGG
AGGAATTGTGAGGTGCAATA

Downstream 100 bases:

>100_bases
CACTATTGAAAGTCTGACACTATTGAAAGTCTGACACTATTGATGAGCTGATTTTTTCAATTTTTTTAGAGCTATAAAGA
GTTTTCAAGTGGTCTGCTGA

Product: peptide ABC transporter ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MYLKCENISFGYKKNSLVLDNVSLSLRSGEVLGLVGDSGSGKSTLCKILAGYENKYQGKVSLDGKEIPSKGYNPVQLIFQ
HPEKAVNPKWKMKDILNEGHNVPQEILDSFGIKKGWLNRWPNELSGGELQRFALARALGSETKFLIADEITTMLDAITQA
QIWNTVLEIVKERNIGVLVVSHEKNLIKKLCHDVVYLKDVNRV

Sequences:

>Translated_203_residues
MYLKCENISFGYKKNSLVLDNVSLSLRSGEVLGLVGDSGSGKSTLCKILAGYENKYQGKVSLDGKEIPSKGYNPVQLIFQ
HPEKAVNPKWKMKDILNEGHNVPQEILDSFGIKKGWLNRWPNELSGGELQRFALARALGSETKFLIADEITTMLDAITQA
QIWNTVLEIVKERNIGVLVVSHEKNLIKKLCHDVVYLKDVNRV
>Mature_203_residues
MYLKCENISFGYKKNSLVLDNVSLSLRSGEVLGLVGDSGSGKSTLCKILAGYENKYQGKVSLDGKEIPSKGYNPVQLIFQ
HPEKAVNPKWKMKDILNEGHNVPQEILDSFGIKKGWLNRWPNELSGGELQRFALARALGSETKFLIADEITTMLDAITQA
QIWNTVLEIVKERNIGVLVVSHEKNLIKKLCHDVVYLKDVNRV

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955968, Length=219, Percent_Identity=31.5068493150685, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI9955966, Length=219, Percent_Identity=31.5068493150685, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI45243524, Length=219, Percent_Identity=31.5068493150685, Blast_Score=78, Evalue=4e-15,
Organism=Escherichia coli, GI1788506, Length=207, Percent_Identity=34.7826086956522, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1789891, Length=208, Percent_Identity=33.1730769230769, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1787758, Length=217, Percent_Identity=29.4930875576037, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=31.8407960199005, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789890, Length=199, Percent_Identity=33.6683417085427, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=31.3636363636364, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1789962, Length=209, Percent_Identity=28.2296650717703, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI48994883, Length=205, Percent_Identity=30.7317073170732, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=29.6803652968037, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI145693107, Length=198, Percent_Identity=31.3131313131313, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786398, Length=200, Percent_Identity=31, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787547, Length=192, Percent_Identity=29.1666666666667, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=30.5699481865285, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787548, Length=207, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786703, Length=199, Percent_Identity=33.1658291457286, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=31.4720812182741, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081709, Length=195, Percent_Identity=27.1794871794872, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789672, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=30.4568527918782, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787712, Length=183, Percent_Identity=30.6010928961749, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787112, Length=208, Percent_Identity=29.8076923076923, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=214, Percent_Identity=29.4392523364486, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=177, Percent_Identity=30.5084745762712, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=29.2237442922374, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786654, Length=203, Percent_Identity=30.0492610837438, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=29.5238095238095, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=25.9067357512953, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786872, Length=180, Percent_Identity=30, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=29.3577981651376, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788225, Length=208, Percent_Identity=25.4807692307692, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI48994997, Length=204, Percent_Identity=25.4901960784314, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=183, Percent_Identity=26.775956284153, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=25.6038647342995, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788450, Length=207, Percent_Identity=25.6038647342995, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789751, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=28.3582089552239, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789032, Length=185, Percent_Identity=26.4864864864865, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788540, Length=198, Percent_Identity=25.2525252525253, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=27.2277227722772, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789593, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790190, Length=204, Percent_Identity=25.9803921568627, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=25.615763546798, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=222, Percent_Identity=29.2792792792793, Blast_Score=87, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI212646699, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193208177, Length=215, Percent_Identity=26.046511627907, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193209708, Length=207, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17543740, Length=214, Percent_Identity=27.5700934579439, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221500365, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007184, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 22742; Mature: 22742

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MYLKCENISFGYKKNSLVLDNVSLSLRSGEVLGLVGDSGSGKSTLCKILAGYENKYQGKV
CEEEECCCCCCCCCCCEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
SLDGKEIPSKGYNPVQLIFQHPEKAVNPKWKMKDILNEGHNVPQEILDSFGIKKGWLNRW
EECCCCCCCCCCCHHHHHHHCCHHHCCCCHHHHHHHHCCCCCHHHHHHHCCCCCHHHHCC
PNELSGGELQRFALARALGSETKFLIADEITTMLDAITQAQIWNTVLEIVKERNIGVLVV
CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
SHEKNLIKKLCHDVVYLKDVNRV
ECCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYLKCENISFGYKKNSLVLDNVSLSLRSGEVLGLVGDSGSGKSTLCKILAGYENKYQGKV
CEEEECCCCCCCCCCCEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
SLDGKEIPSKGYNPVQLIFQHPEKAVNPKWKMKDILNEGHNVPQEILDSFGIKKGWLNRW
EECCCCCCCCCCCHHHHHHHCCHHHCCCCHHHHHHHHCCCCCHHHHHHHCCCCCHHHHCC
PNELSGGELQRFALARALGSETKFLIADEITTMLDAITQAQIWNTVLEIVKERNIGVLVV
CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
SHEKNLIKKLCHDVVYLKDVNRV
ECCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12397186 [H]