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The map label for this gene is secD [C]

Identifier: 20094445

GI number: 20094445

Start: 968734

End: 969945

Strand: Direct

Name: secD [C]

Synonym: MK1009

Alternate gene names: 20094445

Gene position: 968734-969945 (Clockwise)

Preceding gene: 20094444

Following gene: 20094446

Centisome position: 57.15

GC content: 59.98

Gene sequence:

>1212_bases
TTGTCCGGGCTGGGATGGATGAAAGAGAACTGGAGACTACTCGTGATAACCGCCGTGTGGATCGTAGCAGCGACGTCTCT
CGCGGTGAAGGGAGTGAACCTAGGTCTGGAGCTTAAAGGTGGCACGATGGTCATCGCCAAGACGGATCACCCGGTTAGTA
AGAAAGAGATGGATCAGACCGTGACGGTACTCGAGAGTCGTCTCTCTACCTTCGGCTTCAAAGGCATCAAGATCCAGCCA
GTCGGGCGCGACCACATCATCGTGATGCTTCCAGGTACACCGCCCAAAGAGGCGGTCGAGCTCATCACTAAGCCGGGACG
TTTCGAAGCCAAGTACAAGGGCAAAACCGTCATCACCGGCCAGGATATAGAGTCGGTGGAGTCTCCGAGGATAGAGCGCG
TTGAAGGCGGCTACCAGTGGTCGGTCCCGTTCAGGCTGACGGCGGAAGGCGCCCGCAAGTTCGCGGAGGTAGCCAAGAAC
GCCCCGGGCCAGCCGATCGACATGTACCTCGACAACAAGAAGGTGTCCAGCCCGCGGATCTCCGAGGACCTGGCCATGGC
CGCGGCGTCCGGTCACATGGAGCGGGAGATCGAGATCGTAGGTGGTGCTAAGACCAAGGAGCAGGCGGAGCGTGAAGCCA
AGGAGATCATGGCGGTCCTGCGTTCCGGTCAGCTGCCGGCGAAGCTCGTTCCGGAAGGTGTTTACTCCGTGTCCGCCACG
CTGGGCCAGAACTTCCTCAAGATGGCGATGATCGCCGGAGCGATCGCGTTCGCGGCGGTGTCGGTAATCATCGCGCTGAG
GTACAGGGACATCAGGATCTCGGGTCCGATACTGTTCACGGGATCCTCCGAGGTGGTCTTCCTCATAGGTCTCGCCTCGC
TGACGGGTTTCACGATCGACCTGCCCGCACTGGCGGGAATCATCCTGTCGATAGGTAGCGGCGTGGACGATCTCATAGTG
ATCACCGACGAGATCGTCCGCGGTGAGCGCAGGAAGGAGGAGGTTACACTCCGTCAACGGATCAAGCGGGCCTTCAGCGT
GGTACTGGCGTCGTTCGCGACACTGGCGGCGGCGATGGCGGTATTGTTCGTCGCCGGTATGGGCCTCCTGAAGGGGTTCG
CGATAATGACCATCGCCGGAGCGTTTTACGGTGTCGTCATCACCAGACCGGTGTACGCAGACCTGCTGAAGAAGATACTC
GGAACGGAGTAG

Upstream 100 bases:

>100_bases
AATCGCCGCCGTCGTGATCTTCGGGCTAATCGCGGACGTCCTTAACACGTGGATCTTCAACGCTTGGGTCATCCGCGAGA
AGATCGCGGGGAGGTGATCT

Downstream 100 bases:

>100_bases
GGGGGAGGTAGAAACGGACCCGATCGTGGACGTGAAGCTGGTGAGCAGTATCCTAGGAACCGTCGTGAAGGTCGCCGCCG
TGCTCCCGCTACTCCCCCTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSGLGWMKENWRLLVITAVWIVAATSLAVKGVNLGLELKGGTMVIAKTDHPVSKKEMDQTVTVLESRLSTFGFKGIKIQP
VGRDHIIVMLPGTPPKEAVELITKPGRFEAKYKGKTVITGQDIESVESPRIERVEGGYQWSVPFRLTAEGARKFAEVAKN
APGQPIDMYLDNKKVSSPRISEDLAMAAASGHMEREIEIVGGAKTKEQAEREAKEIMAVLRSGQLPAKLVPEGVYSVSAT
LGQNFLKMAMIAGAIAFAAVSVIIALRYRDIRISGPILFTGSSEVVFLIGLASLTGFTIDLPALAGIILSIGSGVDDLIV
ITDEIVRGERRKEEVTLRQRIKRAFSVVLASFATLAAAMAVLFVAGMGLLKGFAIMTIAGAFYGVVITRPVYADLLKKIL
GTE

Sequences:

>Translated_403_residues
MSGLGWMKENWRLLVITAVWIVAATSLAVKGVNLGLELKGGTMVIAKTDHPVSKKEMDQTVTVLESRLSTFGFKGIKIQP
VGRDHIIVMLPGTPPKEAVELITKPGRFEAKYKGKTVITGQDIESVESPRIERVEGGYQWSVPFRLTAEGARKFAEVAKN
APGQPIDMYLDNKKVSSPRISEDLAMAAASGHMEREIEIVGGAKTKEQAEREAKEIMAVLRSGQLPAKLVPEGVYSVSAT
LGQNFLKMAMIAGAIAFAAVSVIIALRYRDIRISGPILFTGSSEVVFLIGLASLTGFTIDLPALAGIILSIGSGVDDLIV
ITDEIVRGERRKEEVTLRQRIKRAFSVVLASFATLAAAMAVLFVAGMGLLKGFAIMTIAGAFYGVVITRPVYADLLKKIL
GTE
>Mature_402_residues
SGLGWMKENWRLLVITAVWIVAATSLAVKGVNLGLELKGGTMVIAKTDHPVSKKEMDQTVTVLESRLSTFGFKGIKIQPV
GRDHIIVMLPGTPPKEAVELITKPGRFEAKYKGKTVITGQDIESVESPRIERVEGGYQWSVPFRLTAEGARKFAEVAKNA
PGQPIDMYLDNKKVSSPRISEDLAMAAASGHMEREIEIVGGAKTKEQAEREAKEIMAVLRSGQLPAKLVPEGVYSVSATL
GQNFLKMAMIAGAIAFAAVSVIIALRYRDIRISGPILFTGSSEVVFLIGLASLTGFTIDLPALAGIILSIGSGVDDLIVI
TDEIVRGERRKEEVTLRQRIKRAFSVVLASFATLAAAMAVLFVAGMGLLKGFAIMTIAGAFYGVVITRPVYADLLKKILG
TE

Specific function: Involved In Protein Export. [C]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=397, Percent_Identity=24.9370277078086, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 43386; Mature: 43254

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLGWMKENWRLLVITAVWIVAATSLAVKGVNLGLELKGGTMVIAKTDHPVSKKEMDQT
CCCCCCCCCCCEEEEHHHHHHHHHHHHHEEECCEEEEECCCEEEEEECCCCCCHHHHHHH
VTVLESRLSTFGFKGIKIQPVGRDHIIVMLPGTPPKEAVELITKPGRFEAKYKGKTVITG
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEC
QDIESVESPRIERVEGGYQWSVPFRLTAEGARKFAEVAKNAPGQPIDMYLDNKKVSSPRI
CCHHHCCCCCCEEECCCEEEECCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
SEDLAMAAASGHMEREIEIVGGAKTKEQAEREAKEIMAVLRSGQLPAKLVPEGVYSVSAT
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH
LGQNFLKMAMIAGAIAFAAVSVIIALRYRDIRISGPILFTGSSEVVFLIGLASLTGFTID
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCEEEEEEHHHHCCCEEE
LPALAGIILSIGSGVDDLIVITDEIVRGERRKEEVTLRQRIKRAFSVVLASFATLAAAMA
HHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFVAGMGLLKGFAIMTIAGAFYGVVITRPVYADLLKKILGTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGLGWMKENWRLLVITAVWIVAATSLAVKGVNLGLELKGGTMVIAKTDHPVSKKEMDQT
CCCCCCCCCCEEEEHHHHHHHHHHHHHEEECCEEEEECCCEEEEEECCCCCCHHHHHHH
VTVLESRLSTFGFKGIKIQPVGRDHIIVMLPGTPPKEAVELITKPGRFEAKYKGKTVITG
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEC
QDIESVESPRIERVEGGYQWSVPFRLTAEGARKFAEVAKNAPGQPIDMYLDNKKVSSPRI
CCHHHCCCCCCEEECCCEEEECCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
SEDLAMAAASGHMEREIEIVGGAKTKEQAEREAKEIMAVLRSGQLPAKLVPEGVYSVSAT
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH
LGQNFLKMAMIAGAIAFAAVSVIIALRYRDIRISGPILFTGSSEVVFLIGLASLTGFTID
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCEEEEEEHHHHCCCEEE
LPALAGIILSIGSGVDDLIVITDEIVRGERRKEEVTLRQRIKRAFSVVLASFATLAAAMA
HHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFVAGMGLLKGFAIMTIAGAFYGVVITRPVYADLLKKILGTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]