Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311264
Identifier: 18311264
GI number: 18311264
Start: 2626419
End: 2626985
Strand: Reverse
Name: 18311264
Synonym: CPE2282
Alternate gene names: NA
Gene position: 2626985-2626419 (Counterclockwise)
Preceding gene: 18311265
Following gene: 18311263
Centisome position: 86.66
GC content: 26.81
Gene sequence:
>567_bases ATGAGAGATTTTAACTTTTTCTCCCATATAACTGAGGAAAGAAAAAGTGATTCAAAAAGAAAATACATAGGATTTGGATT AATTGGAGCTTTAGTCTTTATATTTGCAGTTAATTTTTCTATAAACATTATACACGGGCATGTTTTAGATAAAAACATAA GTTATTATGAAGGGGAAATAGATAATCCAGATATGAAAGAAAAGTTAGGTATAGCAACGAAGGTTGAAAAGGAGCATGAT GCTTTAGAAAAGTATTATAATGATGTGAAGGTGGCTACAGAACAAGTTTATGATAATAATTATGTAACTACTCAAAGAAT TAAGATAATAAATAGTACTGTTCCTAAGGATTTAGTATTTACTCAAATAAGTATAGATAATAAAACTTTAACAATACAAG CATTATCAAAAACAAGAAGTGCTATAAGTGATCTTCAATATAACTTAAATAATTTAGGTTTTATAGAAAATACATATATA AGTGGAATTGGAGAAAGAAATGCACAGGGAGACTATTCATTCTCCATAAATTGTACTTTAAAGGAGGTAGGAAATAATGA AAATTAA
Upstream 100 bases:
>100_bases ATAGTAATATAGAATTTAAAAAAGGCGTTGAAGAAGTGAATATTTCAGAATACATAAACGCTATTGGAGCCTTAATAAGA CTTTAGGTTGGTGATAAATA
Downstream 100 bases:
>100_bases TAAAAGAGAAAAAACTTTATTATTTGTCCTAGCTCTAGGGGTTGTTGGTTTTGGATATTATAAAGTGGTTTGGGATTATC AATATAACAAATTAAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Fimbrial Assembly Protein PilN; Fimbrial Assembly Protein Family Protein
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MRDFNFFSHITEERKSDSKRKYIGFGLIGALVFIFAVNFSINIIHGHVLDKNISYYEGEIDNPDMKEKLGIATKVEKEHD ALEKYYNDVKVATEQVYDNNYVTTQRIKIINSTVPKDLVFTQISIDNKTLTIQALSKTRSAISDLQYNLNNLGFIENTYI SGIGERNAQGDYSFSINCTLKEVGNNEN
Sequences:
>Translated_188_residues MRDFNFFSHITEERKSDSKRKYIGFGLIGALVFIFAVNFSINIIHGHVLDKNISYYEGEIDNPDMKEKLGIATKVEKEHD ALEKYYNDVKVATEQVYDNNYVTTQRIKIINSTVPKDLVFTQISIDNKTLTIQALSKTRSAISDLQYNLNNLGFIENTYI SGIGERNAQGDYSFSINCTLKEVGNNEN >Mature_188_residues MRDFNFFSHITEERKSDSKRKYIGFGLIGALVFIFAVNFSINIIHGHVLDKNISYYEGEIDNPDMKEKLGIATKVEKEHD ALEKYYNDVKVATEQVYDNNYVTTQRIKIINSTVPKDLVFTQISIDNKTLTIQALSKTRSAISDLQYNLNNLGFIENTYI SGIGERNAQGDYSFSINCTLKEVGNNEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21452; Mature: 21452
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDFNFFSHITEERKSDSKRKYIGFGLIGALVFIFAVNFSINIIHGHVLDKNISYYEGEI CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEECCC DNPDMKEKLGIATKVEKEHDALEKYYNDVKVATEQVYDNNYVTTQRIKIINSTVPKDLVF CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHEEEECCCCCCCEEE TQISIDNKTLTIQALSKTRSAISDLQYNLNNLGFIENTYISGIGERNAQGDYSFSINCTL EEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCCCCCCCEEEEEEEEE KEVGNNEN EECCCCCC >Mature Secondary Structure MRDFNFFSHITEERKSDSKRKYIGFGLIGALVFIFAVNFSINIIHGHVLDKNISYYEGEI CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEECCC DNPDMKEKLGIATKVEKEHDALEKYYNDVKVATEQVYDNNYVTTQRIKIINSTVPKDLVF CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHEEEECCCCCCCEEE TQISIDNKTLTIQALSKTRSAISDLQYNLNNLGFIENTYISGIGERNAQGDYSFSINCTL EEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCCCCCCCEEEEEEEEE KEVGNNEN EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA