Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311265
Identifier: 18311265
GI number: 18311265
Start: 2627000
End: 2628154
Strand: Reverse
Name: 18311265
Synonym: CPE2283
Alternate gene names: NA
Gene position: 2628154-2627000 (Counterclockwise)
Preceding gene: 18311266
Following gene: 18311264
Centisome position: 86.7
GC content: 27.45
Gene sequence:
>1155_bases TTGGCAATAGAAAATAAAGAGAAGAAGAGCATATTGCAGATGAATGTTTCTGATATACTTAAGGCTCTTAAGAAGAAAAA TTCTGAGAAAAAGAATGATAAAAAAGGGAGTAAGAAAAAAGCTAAGAGTGTTATATGTAAAAAAACTATTTCTATTGATA TTGGAAGTGAGAATACAAAGATTATTGTTGGGAGATATCATAAAAATAAGGTTATTATAGACAAGGCTTTTTCTTTTAAG ACTCCAAAAGATGGTATAGATGATGGTCATATTAAGGATATAGATAGTTTGGCTAGAGCTATTACTGATGCTTTGGATTC TAATAATGTTAAGAATGATAATGTAATTTTTACTACAAACAGCACTTCTGTTATAAATAGAACAATTATTATTCCAAAGG TTAATGAGGATGAAATAGAATCAGTTATTAAGTACGAAGTTCAGCAATATCTTCCTATAAACTTAGAGGATCATATGATT CAATATAATGTTTTAGAGGAAAAGGTTATTGATGGGAATGAAAAGCTAGAGGTTTTAATTGTAGTTTATCCTAATAAGAT GGTTTATTCCTATGCAGAGCTTATTAATAAAATTGGTAGAAAACCATATGCTTTAGATTTAAATTATAATTCTAAAAGAA AAGCTTATTACGTAATGAATCCTGAAATAAGGGAGTCTATTTTAAGTATTGATATGGGAGCAGAAAATATAGCATTAACA ATAATGAAAGACAATGAGTTAATACTTATAAAAACTACAAAATCTGGTGGGAATTATTTAAATAGTAAAATATCAAAGGT CTTAGAAATTTCATTAGAAAATGCAGAGATGCAAAAGAGAGAAAATTGTAATTTGATGAATAGAGAAGAAGGGCCTTTAG AGCATGTTGTTAGAGAGGTTGTAGATTCTTGGTTTGATGAAGCAAGTAGAATAATTAAATATTATAAAAGTAAAAATACT CAAAATAATATAGATAAGATATATATTTGTGGAGGAAGTTCAAACATAAAGGGACTAGAAAGATATGTATCTACTAAACT AAACATGAAAGTAAAGATAGTTCAGGGAAATAGTAATATAGAATTTAAAAAAGGCGTTGAAGAAGTGAATATTTCAGAAT ACATAAACGCTATTGGAGCCTTAATAAGACTTTAG
Upstream 100 bases:
>100_bases TATTAGTAAAATAATAAGGTGATTTTTTAATTATAATGAAAAAAGTGTAAGGAATTTTTTCCTTGCACTTTTCAACTATA AAGGTAAAGGAGGGAAAGTT
Downstream 100 bases:
>100_bases GTTGGTGATAAATAATGAGAGATTTTAACTTTTTCTCCCATATAACTGAGGAAAGAAAAAGTGATTCAAAAAGAAAATAC ATAGGATTTGGATTAATTGG
Product: type IV pilus assembly protein PilM
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein ATPase PilM; Type Iv Pilus Assembly Protein Pilm; Type IV Pilus Biogenesis Protein PilM; Protein FtsA; Fimbrial Assembly Protein; Tfp Pilus Assembly Protein; Fimbrial Assembly Protein PilM; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Type 4 Fimbrial Biogenesis Protein PilM; Type IV Fimbrial Biogenesis Protein PilM; PilM Type IV Pilus Assembly Protein; Tfp Pilus Assembly Protein ATPase PilM-Like Protein Protein; Type 4 Fimbrial Biogenesis Protein; Competence Protein PilM; Type IV Pilus Biogenesis ATPase PilM
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MAIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTKIIVGRYHKNKVIIDKAFSFK TPKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTNSTSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMI QYNVLEEKVIDGNEKLEVLIVVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALT IMKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREVVDSWFDEASRIIKYYKSKNT QNNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNIEFKKGVEEVNISEYINAIGALIRL
Sequences:
>Translated_384_residues MAIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTKIIVGRYHKNKVIIDKAFSFK TPKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTNSTSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMI QYNVLEEKVIDGNEKLEVLIVVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALT IMKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREVVDSWFDEASRIIKYYKSKNT QNNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNIEFKKGVEEVNISEYINAIGALIRL >Mature_383_residues AIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTKIIVGRYHKNKVIIDKAFSFKT PKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTNSTSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMIQ YNVLEEKVIDGNEKLEVLIVVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALTI MKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREVVDSWFDEASRIIKYYKSKNTQ NNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNIEFKKGVEEVNISEYINAIGALIRL
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43739; Mature: 43608
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTK CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCE IIVGRYHKNKVIIDKAFSFKTPKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTN EEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC STSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMIQYNVLEEKVIDGNEKLEVLI CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHCCCCCCEEEEE VVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALT EECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCCCEEEEE IMKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREV EEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHH VDSWFDEASRIIKYYKSKNTQNNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNI HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC EFKKGVEEVNISEYINAIGALIRL CHHCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure AIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTK CCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCE IIVGRYHKNKVIIDKAFSFKTPKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTN EEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC STSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMIQYNVLEEKVIDGNEKLEVLI CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHCCCCCCEEEEE VVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALT EECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCCCEEEEE IMKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREV EEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHH VDSWFDEASRIIKYYKSKNTQNNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNI HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC EFKKGVEEVNISEYINAIGALIRL CHHCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA