| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yqhQ [H]
Identifier: 18311185
GI number: 18311185
Start: 2522229
End: 2523938
Strand: Reverse
Name: yqhQ [H]
Synonym: CPE2203
Alternate gene names: 18311185
Gene position: 2523938-2522229 (Counterclockwise)
Preceding gene: 18311186
Following gene: 18311184
Centisome position: 83.26
GC content: 28.36
Gene sequence:
>1710_bases ATCAAAAGGAAACAGCTACAGCAGGTTAGAACTCCAGAGGGAGATATAGAAGGTTCTTTTGAAAAAACTATACCATATAC AAAGAAAAATAAAATTTTAGGACTACCTTTTATAAGAGGATTTGTAACTCTTATAGAGTCTTTAATTGTAGGATTAAAAT CATTAAATTATTCAGCAAGTTTTTTTGATGATACAGAACCATCTAAATTTGAAGATTGGTTAAATAATAAATTTGGTGAA AAAGCTAATAATGTAATAATGACACTTACAATTATGCTTTCCTTTGTATTTGCCATAATTTTATTTGTAGCAATACCAAC TGGAATTACTTTTTTACTTAAAAAACTTAACCTTCCAGATTGGAGTTTAAGTGCTATTGAAGGAATCATAAGTATTGGTA TGCTTTTAGGATACATGTACTTAATGGGAAAAGTAGATGATATAGAAAGAGTATTTCAATATCATGGAGCAGAACATAAG ACTATATTCTGTTATGAGAATGAAGATGAACTTACAGTTGAAAATGTAAGAAAATATCCTAGATTTCATCCTAGATGTGG AACAAACTTTCTATTTTTAGTTGCTATTGTAAGTATATTTATATTTTCCTTTACTAAATGGGATTCAGTTGCTCAGAGAA CGGCTATAAGAGTAGCAATGTTACCAGTAATATCAGGAATAACTTATGAACTTATAAGATGGCTTGGCAAATCTCAAGGA AATTTTGCAAAGATAATAGCAGCGCCAGGATTACAATTGCAAAAATTGACTACAAGGGAGCCTGATGATTCACAAATTGA AGTAGCGATAGCTTCTTTAAGGAGGGCTGAAGGATTGAAAGAACCAAATAAAAAAGTTGGAGAATTATTAAATTTAGGAA ATGAAACTTTAAAAGAAGTGGGTATAGATACATATATATTAGATACTCAATTATTATTAGGAAAAGTTTTAGAAAAAGAT AAAATATGGCTTATAACTAATAAAAGTGAAGAAGTTAAAAAGTCAGATGAAATACATTTCTTAAATTTATTAGAAAAAAG AAAATTAAAGATGCCTATGCAATATATTTTAGGAACTTGCGAATTCATGGGATTAGATTTTTATGTAGAAGAAGGAGTTT TAATTCCAAGAGGAGATACTGAAATAATTGTAGAGGAAGTATTAAACAATATAGATGAAGATGCAGAAATTAATGTATGT GATTTATGTTGTGGAAGTGGAGCTATAGGCTTATCTTTAGCTAATTATAGAAAGAATATTATTGTAGATTTAGTAGATAT AGATGATATACCAGAAAAAGTTACAAGAAAAAATATAAGAGAATTAGAATTATCAAAAAGATGTGGCTTTATTAAGAGTG ATCTTTTAAGTGAAGTCATTAAAAAAGGAAATAAGTATGATATTCTAGTTTCTAATCCACCATATATAAGAACAGAAGTA ATAAATACTTTAATGGAAGATGTTAAAGATTATGAGCCGCACTTAGCTTTAGATGGGGGAGAAGATGGTTTAATATTCTA TAGAAGAATTATTGATGAATCTTTAGAAGTATTAAAAGAAAATGGTATATTAGCTTTTGAAATAGGACATGATCAAGGTG AGGATGTTAAAAATCTTATGATTGAAAAAGGATACTACGATGTTAAGGTCATAAAAGATTTAGCTGGTTTAGATAGATGT GTTATAGGAAGAGTAAGCCTTGAAAGATAG
Upstream 100 bases:
>100_bases AGGATTCTGATAATTAGTTAATGAAAGGATAGGGTTCAAATTATGAGAAAATGCCAAGTAAGGCGGTCAAGCAGTATTAG GAAGGCGTTATGATGAGGGG
Downstream 100 bases:
>100_bases CATAGTAGTGTGCTATAATTGTAAAATATGAAAATCTGTATACGGAGTGATAATAGATGATACTTGATAGATTAAATTTT ATTGAAAATAAATATGATGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MKRKQLQQVRTPEGDIEGSFEKTIPYTKKNKILGLPFIRGFVTLIESLIVGLKSLNYSASFFDDTEPSKFEDWLNNKFGE KANNVIMTLTIMLSFVFAIILFVAIPTGITFLLKKLNLPDWSLSAIEGIISIGMLLGYMYLMGKVDDIERVFQYHGAEHK TIFCYENEDELTVENVRKYPRFHPRCGTNFLFLVAIVSIFIFSFTKWDSVAQRTAIRVAMLPVISGITYELIRWLGKSQG NFAKIIAAPGLQLQKLTTREPDDSQIEVAIASLRRAEGLKEPNKKVGELLNLGNETLKEVGIDTYILDTQLLLGKVLEKD KIWLITNKSEEVKKSDEIHFLNLLEKRKLKMPMQYILGTCEFMGLDFYVEEGVLIPRGDTEIIVEEVLNNIDEDAEINVC DLCCGSGAIGLSLANYRKNIIVDLVDIDDIPEKVTRKNIRELELSKRCGFIKSDLLSEVIKKGNKYDILVSNPPYIRTEV INTLMEDVKDYEPHLALDGGEDGLIFYRRIIDESLEVLKENGILAFEIGHDQGEDVKNLMIEKGYYDVKVIKDLAGLDRC VIGRVSLER
Sequences:
>Translated_569_residues MKRKQLQQVRTPEGDIEGSFEKTIPYTKKNKILGLPFIRGFVTLIESLIVGLKSLNYSASFFDDTEPSKFEDWLNNKFGE KANNVIMTLTIMLSFVFAIILFVAIPTGITFLLKKLNLPDWSLSAIEGIISIGMLLGYMYLMGKVDDIERVFQYHGAEHK TIFCYENEDELTVENVRKYPRFHPRCGTNFLFLVAIVSIFIFSFTKWDSVAQRTAIRVAMLPVISGITYELIRWLGKSQG NFAKIIAAPGLQLQKLTTREPDDSQIEVAIASLRRAEGLKEPNKKVGELLNLGNETLKEVGIDTYILDTQLLLGKVLEKD KIWLITNKSEEVKKSDEIHFLNLLEKRKLKMPMQYILGTCEFMGLDFYVEEGVLIPRGDTEIIVEEVLNNIDEDAEINVC DLCCGSGAIGLSLANYRKNIIVDLVDIDDIPEKVTRKNIRELELSKRCGFIKSDLLSEVIKKGNKYDILVSNPPYIRTEV INTLMEDVKDYEPHLALDGGEDGLIFYRRIIDESLEVLKENGILAFEIGHDQGEDVKNLMIEKGYYDVKVIKDLAGLDRC VIGRVSLER >Mature_569_residues MKRKQLQQVRTPEGDIEGSFEKTIPYTKKNKILGLPFIRGFVTLIESLIVGLKSLNYSASFFDDTEPSKFEDWLNNKFGE KANNVIMTLTIMLSFVFAIILFVAIPTGITFLLKKLNLPDWSLSAIEGIISIGMLLGYMYLMGKVDDIERVFQYHGAEHK TIFCYENEDELTVENVRKYPRFHPRCGTNFLFLVAIVSIFIFSFTKWDSVAQRTAIRVAMLPVISGITYELIRWLGKSQG NFAKIIAAPGLQLQKLTTREPDDSQIEVAIASLRRAEGLKEPNKKVGELLNLGNETLKEVGIDTYILDTQLLLGKVLEKD KIWLITNKSEEVKKSDEIHFLNLLEKRKLKMPMQYILGTCEFMGLDFYVEEGVLIPRGDTEIIVEEVLNNIDEDAEINVC DLCCGSGAIGLSLANYRKNIIVDLVDIDDIPEKVTRKNIRELELSKRCGFIKSDLLSEVIKKGNKYDILVSNPPYIRTEV INTLMEDVKDYEPHLALDGGEDGLIFYRRIIDESLEVLKENGILAFEIGHDQGEDVKNLMIEKGYYDVKVIKDLAGLDRC VIGRVSLER
Specific function: Methylates The Translation Termination Release Factor Rf1 On Gln-235 And Rf2 On Gln-252. [C]
COG id: COG3872
COG function: function code R; Predicted metal-dependent enzyme
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7705409, Length=239, Percent_Identity=30.1255230125523, Blast_Score=99, Evalue=1e-20, Organism=Escherichia coli, GI1787463, Length=259, Percent_Identity=30.5019305019305, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI87082085, Length=181, Percent_Identity=32.5966850828729, Blast_Score=101, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6324266, Length=199, Percent_Identity=30.6532663316583, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI24582226, Length=264, Percent_Identity=28.7878787878788, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010787 - ProDom: PD131510 [H]
Pfam domain/function: PF07136 DUF1385 [H]
EC number: 2.1.1.- [C]
Molecular weight: Translated: 64666; Mature: 64666
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKQLQQVRTPEGDIEGSFEKTIPYTKKNKILGLPFIRGFVTLIESLIVGLKSLNYSAS CCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCC FFDDTEPSKFEDWLNNKFGEKANNVIMTLTIMLSFVFAIILFVAIPTGITFLLKKLNLPD CCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WSLSAIEGIISIGMLLGYMYLMGKVDDIERVFQYHGAEHKTIFCYENEDELTVENVRKYP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCC RFHPRCGTNFLFLVAIVSIFIFSFTKWDSVAQRTAIRVAMLPVISGITYELIRWLGKSQG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC NFAKIIAAPGLQLQKLTTREPDDSQIEVAIASLRRAEGLKEPNKKVGELLNLGNETLKEV CEEEEEECCCCEEEHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHC GIDTYILDTQLLLGKVLEKDKIWLITNKSEEVKKSDEIHFLNLLEKRKLKMPMQYILGTC CCCCEEHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH EFMGLDFYVEEGVLIPRGDTEIIVEEVLNNIDEDAEINVCDLCCGSGAIGLSLANYRKNI HHHCCEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHEECCCCCHHHHHHHCCCCE IVDLVDIDDIPEKVTRKNIRELELSKRCGFIKSDLLSEVIKKGNKYDILVSNPPYIRTEV EEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH INTLMEDVKDYEPHLALDGGEDGLIFYRRIIDESLEVLKENGILAFEIGHDQGEDVKNLM HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH IEKGYYDVKVIKDLAGLDRCVIGRVSLER HHCCCCHHHHHHHHHCCHHHHCCCCCCCC >Mature Secondary Structure MKRKQLQQVRTPEGDIEGSFEKTIPYTKKNKILGLPFIRGFVTLIESLIVGLKSLNYSAS CCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCC FFDDTEPSKFEDWLNNKFGEKANNVIMTLTIMLSFVFAIILFVAIPTGITFLLKKLNLPD CCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WSLSAIEGIISIGMLLGYMYLMGKVDDIERVFQYHGAEHKTIFCYENEDELTVENVRKYP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCC RFHPRCGTNFLFLVAIVSIFIFSFTKWDSVAQRTAIRVAMLPVISGITYELIRWLGKSQG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC NFAKIIAAPGLQLQKLTTREPDDSQIEVAIASLRRAEGLKEPNKKVGELLNLGNETLKEV CEEEEEECCCCEEEHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHC GIDTYILDTQLLLGKVLEKDKIWLITNKSEEVKKSDEIHFLNLLEKRKLKMPMQYILGTC CCCCEEHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH EFMGLDFYVEEGVLIPRGDTEIIVEEVLNNIDEDAEINVCDLCCGSGAIGLSLANYRKNI HHHCCEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHEECCCCCHHHHHHHCCCCE IVDLVDIDDIPEKVTRKNIRELELSKRCGFIKSDLLSEVIKKGNKYDILVSNPPYIRTEV EEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH INTLMEDVKDYEPHLALDGGEDGLIFYRRIIDESLEVLKENGILAFEIGHDQGEDVKNLM HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH IEKGYYDVKVIKDLAGLDRCVIGRVSLER HHCCCCHHHHHHHHHCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]