Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is gltI [H]
Identifier: 17546980
GI number: 17546980
Start: 2452605
End: 2453531
Strand: Reverse
Name: gltI [H]
Synonym: RSc2261
Alternate gene names: 17546980
Gene position: 2453531-2452605 (Counterclockwise)
Preceding gene: 17546981
Following gene: 17546973
Centisome position: 66.02
GC content: 63.11
Gene sequence:
>927_bases ATGAAGACCTTGCACACGACCCGGCGCACGCTGCGCTGCCTGACGATGGCCGCGGCCGGCGCCCTGGCGATGCTGTCGGC CGGCGCGCAGGCGCAGTCCAACGACACCCTGGCGAAGATCAAGCAATCGGGCGTGATCTCCGTCGGCTATCGCGAATCGT CGATCCCGTTCTCGTACGAGGCCAGCAGCGGCAACATCACCGGCTACTCGCAGGAGATCTCCAACCTGATCGTCGACGGC GTGAAGAAGAAGCTCGGCCTGTCCGGCCTGCAGGTCAAGCTCACGCCGATCACCTCGCAGAACCGCATCCCGCTGCTGCA GAACGGCACCATCGATTTCGAGTGCGGCTCCACCACCAACAACCTGGAGCGCCAGAAGCAAGTGGCGTTCTCCAACAACA TCTTCATCTACGGCATGCTGATGCTGGTGAAGAAGGACGCCGGCATCAAGGACTTCCCCGACCTGAAGGGCAAGACCGTG GTCACTACCGCCGGCACCACCGAAGACCGCATCCTGCAGAAGATGAACGGCGAGGCGAAGGACGCCGACAAGATGAACCT GATCCTCGCCAAGGATCACGGCCAGGCCTTCCTGACGCTGGAGTCGGGCCGCGCCGTGGCCTTCGTGATGGACGAGCCGC TGCTCTATGGCGAGCGCACCAAGGCCAAGAACCAGAACGACTGGGTGGTGGTCGGCACGCCGCTGCAGACCGAGACCTAC GCGTGCATGATGCGCAAGGACGATCCGGCCTTCAAGAAGGTCGCTGACGACGTGATCGCCGATCTGATGACCTCGGGCCG CGCTGGGGCGCTGTACAAGAAGTGGTTCCTGTCTCCGATTCCGCCCAAGGGCCTGAACCTGAACTACCCGATGACGGAGG GCATGAAGGCGCTGTACGCCCACCCGAACGACAAGGCGATCCAGTAA
Upstream 100 bases:
>100_bases GCGGCGGCGCCGTATGCGCTGGCGCGCTAGGCACGCGATCCGTATCGGCCTTTCTTGGTGAAGCAGTCCTGACCCGAACA TCCCGAACAGGAGGGGAATC
Downstream 100 bases:
>100_bases CGCGGCCGATCGGGCGAGAGGCGGCGCCGGACGCACCGGCAGCCGTACCGGTGGAGGCGGGGGACGTGGTCTCCCGTTCT TTTCATGGGCACGCGCCCGG
Product: amino-acid-binding periplasmic (PBP) ABC transporter protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MKTLHTTRRTLRCLTMAAAGALAMLSAGAQAQSNDTLAKIKQSGVISVGYRESSIPFSYEASSGNITGYSQEISNLIVDG VKKKLGLSGLQVKLTPITSQNRIPLLQNGTIDFECGSTTNNLERQKQVAFSNNIFIYGMLMLVKKDAGIKDFPDLKGKTV VTTAGTTEDRILQKMNGEAKDADKMNLILAKDHGQAFLTLESGRAVAFVMDEPLLYGERTKAKNQNDWVVVGTPLQTETY ACMMRKDDPAFKKVADDVIADLMTSGRAGALYKKWFLSPIPPKGLNLNYPMTEGMKALYAHPNDKAIQ
Sequences:
>Translated_308_residues MKTLHTTRRTLRCLTMAAAGALAMLSAGAQAQSNDTLAKIKQSGVISVGYRESSIPFSYEASSGNITGYSQEISNLIVDG VKKKLGLSGLQVKLTPITSQNRIPLLQNGTIDFECGSTTNNLERQKQVAFSNNIFIYGMLMLVKKDAGIKDFPDLKGKTV VTTAGTTEDRILQKMNGEAKDADKMNLILAKDHGQAFLTLESGRAVAFVMDEPLLYGERTKAKNQNDWVVVGTPLQTETY ACMMRKDDPAFKKVADDVIADLMTSGRAGALYKKWFLSPIPPKGLNLNYPMTEGMKALYAHPNDKAIQ >Mature_308_residues MKTLHTTRRTLRCLTMAAAGALAMLSAGAQAQSNDTLAKIKQSGVISVGYRESSIPFSYEASSGNITGYSQEISNLIVDG VKKKLGLSGLQVKLTPITSQNRIPLLQNGTIDFECGSTTNNLERQKQVAFSNNIFIYGMLMLVKKDAGIKDFPDLKGKTV VTTAGTTEDRILQKMNGEAKDADKMNLILAKDHGQAFLTLESGRAVAFVMDEPLLYGERTKAKNQNDWVVVGTPLQTETY ACMMRKDDPAFKKVADDVIADLMTSGRAGALYKKWFLSPIPPKGLNLNYPMTEGMKALYAHPNDKAIQ
Specific function: Part of the binding-protein-dependent transport system for glutamate and aspartate. Binds to both aspartate and glutamate [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1786876, Length=272, Percent_Identity=60.2941176470588, Blast_Score=340, Evalue=9e-95, Organism=Escherichia coli, GI1788228, Length=282, Percent_Identity=28.3687943262411, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787031, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 33637; Mature: 33637
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLHTTRRTLRCLTMAAAGALAMLSAGAQAQSNDTLAKIKQSGVISVGYRESSIPFSYE CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCCCCEEEE ASSGNITGYSQEISNLIVDGVKKKLGLSGLQVKLTPITSQNRIPLLQNGTIDFECGSTTN CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCEEEEECCCCCC NLERQKQVAFSNNIFIYGMLMLVKKDAGIKDFPDLKGKTVVTTAGTTEDRILQKMNGEAK HHHHHHHHHHCCCEEEEEEEEEHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCC DADKMNLILAKDHGQAFLTLESGRAVAFVMDEPLLYGERTKAKNQNDWVVVGTPLQTETY CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCCCCCCCCCCEEEEECCCCCCCE ACMMRKDDPAFKKVADDVIADLMTSGRAGALYKKWFLSPIPPKGLNLNYPMTEGMKALYA EEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCEEEE HPNDKAIQ CCCCCCCC >Mature Secondary Structure MKTLHTTRRTLRCLTMAAAGALAMLSAGAQAQSNDTLAKIKQSGVISVGYRESSIPFSYE CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCCCCEEEE ASSGNITGYSQEISNLIVDGVKKKLGLSGLQVKLTPITSQNRIPLLQNGTIDFECGSTTN CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCEEEEECCCCCC NLERQKQVAFSNNIFIYGMLMLVKKDAGIKDFPDLKGKTVVTTAGTTEDRILQKMNGEAK HHHHHHHHHHCCCEEEEEEEEEHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCC DADKMNLILAKDHGQAFLTLESGRAVAFVMDEPLLYGERTKAKNQNDWVVVGTPLQTETY CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCCCCCCCCCCEEEEECCCCCCCE ACMMRKDDPAFKKVADDVIADLMTSGRAGALYKKWFLSPIPPKGLNLNYPMTEGMKALYA EEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCEEEE HPNDKAIQ CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10493123; 1091635; 1091636 [H]