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The map label for this gene is ycdC [C]

Identifier: 17545726

GI number: 17545726

Start: 1057230

End: 1057949

Strand: Direct

Name: ycdC [C]

Synonym: RSc1007

Alternate gene names: 17545726

Gene position: 1057230-1057949 (Clockwise)

Preceding gene: 17545723

Following gene: 17545730

Centisome position: 28.45

GC content: 66.53

Gene sequence:

>720_bases
ATGCCGTCTTCTCCCGCCGTGCCGCTCACAGACGTCGATTCGCCCGCCGATGCCGTCCAGGGCGAGACCGCCCCCGGCGA
TACCGGCACACCGCGCGCGCGTCGCGATCCGGCCGGTACGCGCCGCCGCATCCTGGCGGCCGCCACCGAGGAGTTCTCGC
GCGGCGGTTTCGCCGGGGCCCGGGTCGATGCCATCGCCCGCAGGGCCGAGATCAACGAGCGCATGCTGTACTACTACTAC
GGCAGCAAGGAAAAGCTCTTCCTGGCGGTGCTCGAGCACATGTACTTCCGCTTCAAGGAGGCCGAGGAGCGCGTGCAGAT
CGAGGCGGCCGATCCGCGCGAGGCCGTGATCCAGCTGGCCCGCTTCGTCTGGGACTTCTATTACGAGAATCCCGAGTTCA
TCCGCCTGCTCAACAGCGAGAATCTGCATGAGGCGCGGCACCTGAAGGCGTCGCCGCACCTGGGCCAACTGGTCAATCCG
ATCATCGAGGTGCTGCGCGGGGTGGTCGAGCGCGGTCAGCGCGCCGGTCTGTTCCGCGAGGATGTCGACGTGTCTCGGCT
GTACCTGACGATTTCGGCGCTGGGCTACTACGTGCTGTCCAACCGCTACACGATCAGCGCGGTGGTCGGGCGCGATGTGG
CCTCGGCGGAAGAGCATGAGGCTTTCGCCCAGCTGCATATCCGGATGCTGCTCGCGTATCTCGAGCATCCCAGGGTTTGA

Upstream 100 bases:

>100_bases
ATTTGACGCGCGTGCAAGGCGTGCATGTCCCGACCGGCCCGCCGGCGAAGTCGGTTCGGGCGTGTGACATAATCAATCGG
TTCCAACGGATCGCCGTGCC

Downstream 100 bases:

>100_bases
GATGGGCGCCAGCCCAAAGAAAAAGCCTCGCGATAAGCGAGGCTTTTTTCGTGCAGGCACGGCGATCAGGCGACCGCCTT
GATGCGCGTGCTGCTGTCGT

Product: transcription regulator protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MPSSPAVPLTDVDSPADAVQGETAPGDTGTPRARRDPAGTRRRILAAATEEFSRGGFAGARVDAIARRAEINERMLYYYY
GSKEKLFLAVLEHMYFRFKEAEERVQIEAADPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKASPHLGQLVNP
IIEVLRGVVERGQRAGLFREDVDVSRLYLTISALGYYVLSNRYTISAVVGRDVASAEEHEAFAQLHIRMLLAYLEHPRV

Sequences:

>Translated_239_residues
MPSSPAVPLTDVDSPADAVQGETAPGDTGTPRARRDPAGTRRRILAAATEEFSRGGFAGARVDAIARRAEINERMLYYYY
GSKEKLFLAVLEHMYFRFKEAEERVQIEAADPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKASPHLGQLVNP
IIEVLRGVVERGQRAGLFREDVDVSRLYLTISALGYYVLSNRYTISAVVGRDVASAEEHEAFAQLHIRMLLAYLEHPRV
>Mature_238_residues
PSSPAVPLTDVDSPADAVQGETAPGDTGTPRARRDPAGTRRRILAAATEEFSRGGFAGARVDAIARRAEINERMLYYYYG
SKEKLFLAVLEHMYFRFKEAEERVQIEAADPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKASPHLGQLVNPI
IEVLRGVVERGQRAGLFREDVDVSRLYLTISALGYYVLSNRYTISAVVGRDVASAEEHEAFAQLHIRMLLAYLEHPRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27063; Mature: 26932

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSPAVPLTDVDSPADAVQGETAPGDTGTPRARRDPAGTRRRILAAATEEFSRGGFAGA
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
RVDAIARRAEINERMLYYYYGSKEKLFLAVLEHMYFRFKEAEERVQIEAADPREAVIQLA
HHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
RFVWDFYYENPEFIRLLNSENLHEARHLKASPHLGQLVNPIIEVLRGVVERGQRAGLFRE
HHHHHHHCCCHHHEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
DVDVSRLYLTISALGYYVLSNRYTISAVVGRDVASAEEHEAFAQLHIRMLLAYLEHPRV
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSSPAVPLTDVDSPADAVQGETAPGDTGTPRARRDPAGTRRRILAAATEEFSRGGFAGA
CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
RVDAIARRAEINERMLYYYYGSKEKLFLAVLEHMYFRFKEAEERVQIEAADPREAVIQLA
HHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
RFVWDFYYENPEFIRLLNSENLHEARHLKASPHLGQLVNPIIEVLRGVVERGQRAGLFRE
HHHHHHHCCCHHHEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
DVDVSRLYLTISALGYYVLSNRYTISAVVGRDVASAEEHEAFAQLHIRMLLAYLEHPRV
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA