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The map label for this gene is ycdI [C]

Identifier: 17545723

GI number: 17545723

Start: 1054966

End: 1055553

Strand: Direct

Name: ycdI [C]

Synonym: RSc1004

Alternate gene names: 17545723

Gene position: 1054966-1055553 (Clockwise)

Preceding gene: 17545721

Following gene: 17545726

Centisome position: 28.39

GC content: 64.63

Gene sequence:

>588_bases
ATGCCCACGCTTGAACCGTCCGTGCTCGACCAACTGTTCCATGAAGCCCGCACCCACAACGTGTGGCTGGACAATCCGGT
CGACGACGAACTGCTGCATACGCTGTACGACACCGTCAAGTACGGCCCGACCGCCGCCAACAGCACGCCGGCCCGCTTCG
TCTTCGTCAAGAGCGCTGCTGCCAAGGAACAACTGGTCCCGTGCATGTCGGCCGGCAACCAGGAGAAGACGCGGCAGGCG
CCCGTCACCGTGATCGTCGCGTACGACACCCAGTTTCACGAGCAGCTGCCCAAACTGTTCCCGCACGTCGACGCACGTTC
GTGGTACGCCGGCGACCAGGCCAGGATCAATGCCGCCGCGCTGATGAACAGCTCGCTGCAGGGCGGCTACCTGGTGATCG
CGGCGCGCGCGCTGGGACTCGACTGCGGGCCGATGGGCGGCTTCGATGCCGACAAGGTGAACGCCACCTTCTTCCCCGAC
GGCCAGTGGAAGGTCAACTTCATCTGCAACCTCGGCTATGGCGATACCAGCAAGGTGCATCCGCGCAATCCGCGCCTGAC
GTTCGAAGAGGCCTGCCGGGTGCTCTGA

Upstream 100 bases:

>100_bases
CCGCGCAGCCGAGCGGCGGGCGTCGCCGATGTGTTCCAACAGTCACGGTGCGCCGCCATTACAATGCGCACTGTTCCTTT
TCTTTCCGGAGTCTTCTGCA

Downstream 100 bases:

>100_bases
CCGGCCGGCAATACGCAGAAGCAGACGTGCAGCGGGGGACTCTGGGTCCCCCGTTTTTCATTCTTTCGGCGCCGGCGTCT
TCGGCCTGAACTCGCATAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPTLEPSVLDQLFHEARTHNVWLDNPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKEQLVPCMSAGNQEKTRQA
PVTVIVAYDTQFHEQLPKLFPHVDARSWYAGDQARINAAALMNSSLQGGYLVIAARALGLDCGPMGGFDADKVNATFFPD
GQWKVNFICNLGYGDTSKVHPRNPRLTFEEACRVL

Sequences:

>Translated_195_residues
MPTLEPSVLDQLFHEARTHNVWLDNPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKEQLVPCMSAGNQEKTRQA
PVTVIVAYDTQFHEQLPKLFPHVDARSWYAGDQARINAAALMNSSLQGGYLVIAARALGLDCGPMGGFDADKVNATFFPD
GQWKVNFICNLGYGDTSKVHPRNPRLTFEEACRVL
>Mature_194_residues
PTLEPSVLDQLFHEARTHNVWLDNPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKEQLVPCMSAGNQEKTRQAP
VTVIVAYDTQFHEQLPKLFPHVDARSWYAGDQARINAAALMNSSLQGGYLVIAARALGLDCGPMGGFDADKVNATFFPDG
QWKVNFICNLGYGDTSKVHPRNPRLTFEEACRVL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily

Homologues:

Organism=Escherichia coli, GI1787243, Length=192, Percent_Identity=52.0833333333333, Blast_Score=218, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1004_RALSO (Q8Y0N9)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_519125.1
- ProteinModelPortal:   Q8Y0N9
- SMR:   Q8Y0N9
- GeneID:   1219813
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc1004
- NMPDR:   fig|267608.1.peg.1004
- HOGENOM:   HBG322534
- OMA:   MGPTSAN
- ProtClustDB:   PRK05365
- BioCyc:   RSOL267608:RSC1004-MONOMER
- HAMAP:   MF_01204
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21539; Mature: 21407

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLEPSVLDQLFHEARTHNVWLDNPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAA
CCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHH
AKEQLVPCMSAGNQEKTRQAPVTVIVAYDTQFHEQLPKLFPHVDARSWYAGDQARINAAA
HHHHHHHHHHCCCCCHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LMNSSLQGGYLVIAARALGLDCGPMGGFDADKVNATFFPDGQWKVNFICNLGYGDTSKVH
HHCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCC
PRNPRLTFEEACRVL
CCCCCCCHHHHHCCC
>Mature Secondary Structure 
PTLEPSVLDQLFHEARTHNVWLDNPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAA
CCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHH
AKEQLVPCMSAGNQEKTRQAPVTVIVAYDTQFHEQLPKLFPHVDARSWYAGDQARINAAA
HHHHHHHHHHCCCCCHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LMNSSLQGGYLVIAARALGLDCGPMGGFDADKVNATFFPDGQWKVNFICNLGYGDTSKVH
HHCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCC
PRNPRLTFEEACRVL
CCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852