| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is rfaZ
Identifier: 16767000
GI number: 16767000
Start: 3910807
End: 3911616
Strand: Reverse
Name: rfaZ
Synonym: STM3715
Alternate gene names: 16767000
Gene position: 3911616-3910807 (Counterclockwise)
Preceding gene: 16767001
Following gene: 16766999
Centisome position: 80.53
GC content: 37.9
Gene sequence:
>810_bases ATGGGCAGCGTTAACTTCATAACTCACGCCGATGTTCTGCAACTTATTGCGAAAAGAACGGCTGAAGATTGTATTATTTT TCTTTCTGGTCCTACGTCCAGAAAGACGCCGCTGTCCTTGTTACGAATGAAAGATGTCATTGCAGTCAATGGTTCTGTTC AATATTTGCTAAACAATAACGTCAAGCCATTTTTGTACCTTCTGACGGATATTCGCTTCCTCCATCGTCGGCGCGAAGAT TTTTATAACTTTAGCCGTAACAGTCAGTTTACTATCGTCAATCTTGATGTGTACGAACAGGCTTCAGTGGATGATCAAAA ATATATTGAAGAAAACTGTTTAATTATTCGCTCCTTTTATCGCCGAGAAAAAGGGGGCTTTTTAAAGAAAATTAAATTTA ATATCCTCAAGCGGGTTCATAAAGCATTACTTATTTCAGTTCCTCTTTCGAAAAGAGGGCGACTGGCTGGATTTTGCAAG GATATCAGCATCGGGTATTGCTCTTGCCATACTATTGCTTATACCGCTATTCAGGTTGCCTATTCCCTCAAGTATGGCCG TATTATATGTTCTGGGCTTGACTTAACAGGGAGTTGCCCACGTTTCTATGACGAATCTACCAGCCCTATGCCATCTGAGC TTAGTAAAGATCTGTTTAAAATACTGCCATTTTTTACTTTTATGAGAAAAAATGTGAGTGATTTAAATATCTTTAATTTA TCAGATGATACTGCAATTCATTACGATATTATTCCATATATTACAGCCTCGGAGCTTGAGGATGAAATATATTACGATAA AATTGTCTAG
Upstream 100 bases:
>100_bases GCTGCAGCGTTATGACATACTTGAGAGAATTTGAGATGTAATATTAGTTATTGAATATAACATTTATTTATAGGTTGCAT GATAAACATACGAGTTTTTT
Downstream 100 bases:
>100_bases ACACTAGATAAATCATTATTTTTCGTTGCTTCGGCACGCATTTCTTTTTTTTATAACATTTCTTTTTCTATAAAGTTAAC TATTCTGGATTATAGCTATT
Product: lipopolysaccharide core biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MGSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNGSVQYLLNNNVKPFLYLLTDIRFLHRRRED FYNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFYRREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCK DISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKILPFFTFMRKNVSDLNIFNL SDDTAIHYDIIPYITASELEDEIYYDKIV
Sequences:
>Translated_269_residues MGSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNGSVQYLLNNNVKPFLYLLTDIRFLHRRRED FYNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFYRREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCK DISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKILPFFTFMRKNVSDLNIFNL SDDTAIHYDIIPYITASELEDEIYYDKIV >Mature_268_residues GSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNGSVQYLLNNNVKPFLYLLTDIRFLHRRREDF YNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFYRREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCKD ISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKILPFFTFMRKNVSDLNIFNLS DDTAIHYDIIPYITASELEDEIYYDKIV
Specific function: Not Known. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790054, Length=262, Percent_Identity=70.2290076335878, Blast_Score=402, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RFAZ_SALTY (P26473)
Other databases:
- EMBL: M73826 - EMBL: AE006468 - PIR: D41317 - RefSeq: NP_462615.1 - GeneID: 1255239 - GenomeReviews: AE006468_GR - KEGG: stm:STM3715 - NMPDR: fig|99287.1.peg.3591 - HOGENOM: HBG467987 - OMA: PCGLDQH - ProtClustDB: PRK09822 - BioCyc: STYP99287:STM3715-MONOMER - InterPro: IPR009251 - Gene3D: G3DSA:3.90.1480.10
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31003; Mature: 30872
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNGSVQYLLNNN CCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHEEECCCEEEEECCC VKPFLYLLTDIRFLHRRREDFYNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFY CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH RREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCKDISIGYCSCHTIAYTAIQVA HHHCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHH YSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKILPFFTFMRKNVSDLNIFNL HHHHHCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC SDDTAIHYDIIPYITASELEDEIYYDKIV CCCCEEEEEEECCEEHHHHHHHHHHHCCC >Mature Secondary Structure GSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNGSVQYLLNNN CCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHEEECCCEEEEECCC VKPFLYLLTDIRFLHRRREDFYNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFY CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH RREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCKDISIGYCSCHTIAYTAIQVA HHHCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHH YSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKILPFFTFMRKNVSDLNIFNL HHHHHCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC SDDTAIHYDIIPYITASELEDEIYYDKIV CCCCEEEEEEECCEEHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1657881; 11677609