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The map label for this gene is yfdH [H]

Identifier: 16763936

GI number: 16763936

Start: 616437

End: 617363

Strand: Reverse

Name: yfdH [H]

Synonym: STM0558

Alternate gene names: 16763936

Gene position: 617363-616437 (Counterclockwise)

Preceding gene: 16763937

Following gene: 16763935

Centisome position: 12.71

GC content: 42.29

Gene sequence:

>927_bases
ATGAAAATCTCGTTAGTCGTTCCGGTCTTCAATGAAGAAGCCACGATACCTATTTTCTATAAAACGGTTCGCGAGTTTGA
AGAGCTAAAACCGTATGAAGTTGAGATTGTTTTCATCAACGATGGAAGCAAAGATGCGACTGAATCAATAATTAACAAAA
TAGCTGCATCTGATCCGCTCGTTATTCCGCTTTCGTTTACGCGAAACTTCGGTAAAGAACCTGCTCTTTTCGCGGGTCTC
GACCATGCAACCGGGGATGCGGTCATTCCTATTGATGTCGATTTACAGGATCCGATAGAAGTAATCCCCCATCTCATTGA
GAAGTGGCAGGCTGGCGCGGATATGGTGCTGGCTAAGCGCTCAGACCGCTCAACTGACGGGCGCATGAAGCGTAAGACAG
CTGAATGGTTTTATAAGCTGCATAATAAAATCAGCAATCCGAAAATTGAAGAGAACGTTGGCGACTTTCGGTTAATGAGT
CGTGAGGTTGTCGAAAATATTAAACAGATGCCAGAACGTAATCTGTTTATGAAAGGCGTTCTGTCATGGGTGGGCGGCAA
GACTGATGTAGTTGAATACGCCCGCGCTGAGCGTGTTGCCGGCGATTCAAAATTCAATGGCTGGAAATTATGGAATCTGG
CGCTGGAAGGAATAACTTCTTTCTCAACATTTCCGCTCCGCATATGGACTTACATTGGATTGTTTATTGCAGGTATGTCA
TTCCTTTACGGTGCATGGATGATTATTGATAAATTAATATTTGGAAATAATGTTCCTGGCTACCCGTCTCTTCTTGTTTC
TGTACTTTTTCTGGGTGGCGTTCAATTGATAGGAATAGGTATTCTTGGGGAATATATTGGCAGGATTTACATAGAAACAA
AAAAAAGGCCTAAGTACATAATTAAGAATGAGAAGAAAAATGGTTAA

Upstream 100 bases:

>100_bases
AATGTTCCCTGCCGCCACTCCTTACTCTTGTCACCTTTTCAGCTATCAGCCTGATATGCGGATTCATTTATTCAAAGTTC
ATTGTCTTTAGGGATGCGAA

Downstream 100 bases:

>100_bases
CAATAGATTAAAAATGGTAATCGCTATCCTTATAGTTTTCTCGTTGGTGTATTCAATAGGATTTATCACACCAATGAACT
CTGATGACTATACTTATGCC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGL
DHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS
REVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS
FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG

Sequences:

>Translated_308_residues
MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGL
DHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS
REVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS
FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG
>Mature_308_residues
MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGL
DHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS
REVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS
FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG

Specific function: Involved in O antigen modification. Catalyzes the transfer of the glucose residue from UDP-glucose to a lipid carrier [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=239, Percent_Identity=26.7782426778243, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1788692, Length=306, Percent_Identity=88.8888888888889, Blast_Score=568, Evalue=1e-163,
Organism=Escherichia coli, GI1788588, Length=317, Percent_Identity=32.4921135646688, Blast_Score=169, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24585265, Length=235, Percent_Identity=25.531914893617, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 34840; Mature: 34840

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPL
CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR
EEEEHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC
SDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSREVVENIKQMPERNLFMKGV
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS
HHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCEE
IKNEKKNG
ECCCCCCC
>Mature Secondary Structure
MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPL
CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR
EEEEHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC
SDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSREVVENIKQMPERNLFMKGV
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS
HHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCEE
IKNEKKNG
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]