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The map label for this gene is intD [H]

Identifier: 16763933

GI number: 16763933

Start: 613593

End: 613781

Strand: Reverse

Name: intD [H]

Synonym: STM0554

Alternate gene names: 16763933

Gene position: 613781-613593 (Counterclockwise)

Preceding gene: 16763935

Following gene: 16763932

Centisome position: 12.64

GC content: 44.44

Gene sequence:

>189_bases
GTGATTCACAGATATGCTCACCTTGCACCTAATCATTTAACGGAACACGCGAGGAAAATAGACGACATTTTTGGTGATGA
TGTCCCAAATATGTCCCATATGGAAAATAAGGAGGAAATAAAGAAGCGTAACACGTTGATTTATAAGTGGCGCGCCCTGC
AGGATTCGAACCTGCGACCCACGGCTTAG

Upstream 100 bases:

>100_bases
TATAACAGTAGACGCCGGCATGGTTCGAGCGAGCAGATGCCACCGGCTGAATATGAAAACCTATATCATCAACGACTCAG
AAGTGTCCAGGTTATCCGTG

Downstream 100 bases:

>100_bases
AAGGCCGTTGCTCTATCCAACTGAGCTAAGGGCGCCTTGTGAAGTGAAGACTTCGTGTAGACGAAACGCGAGAATTATAC
GGTCAGGCACTCCTGAGTCA

Product: integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRNTLIYKWRALQDSNLRPTA

Sequences:

>Translated_62_residues
MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRNTLIYKWRALQDSNLRPTA
>Mature_62_residues
MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRNTLIYKWRALQDSNLRPTA

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=42, Percent_Identity=83.3333333333333, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 7382; Mature: 7382

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRNTLIYKWRALQDSNLRP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCC
TA
CC
>Mature Secondary Structure
MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRNTLIYKWRALQDSNLRP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCC
TA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]