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The map label for this gene is fimW

Identifier: 16763932

GI number: 16763932

Start: 612706

End: 613302

Strand: Reverse

Name: fimW

Synonym: STM0552

Alternate gene names: 16763932

Gene position: 613302-612706 (Counterclockwise)

Preceding gene: 16763933

Following gene: 16763931

Centisome position: 12.63

GC content: 42.04

Gene sequence:

>597_bases
ATGCTGCGTATCGCTATTAAGGAACAAAACAGTCACTTTGAGCATGGGTTGAAAATCATCATGACGCGTCTGGCGAATCA
ATGGCAGCAGAAAATTGACTTTCTGCCGCCAGAAGAGATAGATAATGCCGATATCGCTTTCCTGGCCCTGGATGATGATT
GGTTCAGCGCTGGCTGTTATCAGATACCTATGCATACCCAACATCAGCTACGGGCGATTATTTGTAATAAATGCGATAAA
GAAAAGCTCATGTTCAGACCATGTCTGTATATGCTGCCGCATATTTATCGGGAAGATGATGTTGAAGAAATTACCCGGAA
AATGATATTGATCTTACATAAACGAGCGCTTCGACATAGCGTCCCTTCTGGCATTTGCCACTACTGCACGACTCGTCATT
TTTCAGTAACAGAACGTCACCTGTTAAAACTGATCGCCAGCGGTTATCATTTAAGCGAAACGGCCGCTTTACTTTCACTT
TCTGAAGAGCAGACAAAGTCACTCCGCCGGAGCATTATGCGAAAATTACATGTTAAAACGGAGCAGCAGTTTTTAAAATA
TATTAGAGTTAACCTTCATTTCTTACTCAGTAAGTAA

Upstream 100 bases:

>100_bases
AGCACGCATAAAGTGGGAATTAAGGCCGCCAGTATTTAGAAAATCAATCAGTTTCTTTAATATTTCACCATGATTCACCT
GCCGTGTAGGATATTTTTTT

Downstream 100 bases:

>100_bases
ACTCACTTAACTTTTTACAAGGCTTACGAAATATCTCACCAATAATTAAGTAACGATACCTACAGGCATTTTTTTAACGC
TGCCACAATGATGCCCATAA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLALDDDWFSAGCYQIPMHTQHQLRAIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK

Sequences:

>Translated_198_residues
MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLALDDDWFSAGCYQIPMHTQHQLRAIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK
>Mature_198_residues
MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLALDDDWFSAGCYQIPMHTQHQLRAIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FIMW_SALTY (P37928)

Other databases:

- EMBL:   L19338
- EMBL:   AE006468
- RefSeq:   NP_459547.1
- PRIDE:   P37928
- GeneID:   1252072
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0552
- NMPDR:   fig|99287.1.peg.537
- HOGENOM:   HBG416518
- OMA:   MLRIAIK
- ProtClustDB:   PRK15201
- BioCyc:   STYP99287:STM0552-MONOMER
- GO:   GO:0005622
- GO:   GO:0009289
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00421

Pfam domain/function: PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector

EC number: NA

Molecular weight: Translated: 23437; Mature: 23437

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLALDDDWFSAGCY
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCE
QIPMHTQHQLRAIICNKCDKEKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHS
ECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
VPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLHVKT
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQQFLKYIRVNLHFLLSK
HHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLALDDDWFSAGCY
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCE
QIPMHTQHQLRAIICNKCDKEKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHS
ECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
VPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLHVKT
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQQFLKYIRVNLHFLLSK
HHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609