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The map label for this gene is yabD [H]

Identifier: 159184782

GI number: 159184782

Start: 1484415

End: 1485197

Strand: Reverse

Name: yabD [H]

Synonym: Atu1495

Alternate gene names: 159184782

Gene position: 1485197-1484415 (Counterclockwise)

Preceding gene: 15888821

Following gene: 159184781

Centisome position: 52.27

GC content: 58.88

Gene sequence:

>783_bases
ATGCTGATCGATACCCATTGCCATCTGGATTTTCCCGATTTCGAGGCGGAGCGCGACGATATCATCGCCCGTGCTCACGC
CTCGGGTGTGAGCCAGATGGTGACGATCTCGACCCGGGTGCGCCGTCTGCCGGAGCTTTTGAAGATCGCGGACAAATATC
CCTCGGTTTTCTGCTCGGTCGGCACACATCCGAACAATGCCGACGAGGAACTGGATATTTCCGCCGACGAGCTTGTGCGG
CTGGCGGAAAGTCACGACAAGATCGTGGCGATCGGTGAGGCGGGTCTGGATTATTTCTACGACACGCAGAAGCCGGAGGA
CCAGAAGACCGGCCTTATTCGTCACATCGAGGCCGCAAGAAGAACGAAGCTACCGCTCGTCATCCACAGCCGCAGCGCCG
ATGACGATATGGCCGCTATCCTGCGCGCCGAAAGCGGGAAGGGCGCATTCCCCTTCATCCTGCACTGCTTTTCCGCCGGT
CCGGAGCTGGCGAAAGCGGGCGTCGAGCTTGGCGGTTACGTGTCTTTTTCCGGCATCCTCACCTTCCCGAAGTCGCAGGA
TATCCGCGATATCGCCGCCACTGTGCCGCTGGACAGGCTGCTTGTTGAAACGGACGCGCCTTATCTTGCGCCGAAGCGCT
GGCGTGGCAAACGCAACGAGCCGTCCTATGTGGTCAACACGGCGGAGGTTCTGGCCGAAGTGCATGGTGTTTCCTTCGAG
CATATGGCCGAAATCACCACCGAAAACGCCTTTCGTTGCTTTTCCAAGATGACAAGGGTGTAG

Upstream 100 bases:

>100_bases
GCGCTCGGCGAAGCCGGTCGTCTGGCTCCAGGCACACCGCTCGAAGCGCCGAAGCCGGTCTTCCCGCGTTACGTTGCCCC
GGAAGCGTGAAGGCGAGACC

Downstream 100 bases:

>100_bases
GTGTGGCAATCTACCGTCGCCGCTTCACGGTTCTCGGTTGCGCGTCGTCGCCCGGCGTGCCGCGCATCAACGGCGACTGG
GGTGCCTGCGACCCTCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLIDTHCHLDFPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVFCSVGTHPNNADEELDISADELVR
LAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIEAARRTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAG
PELAKAGVELGGYVSFSGILTFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGVSFE
HMAEITTENAFRCFSKMTRV

Sequences:

>Translated_260_residues
MLIDTHCHLDFPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVFCSVGTHPNNADEELDISADELVR
LAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIEAARRTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAG
PELAKAGVELGGYVSFSGILTFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGVSFE
HMAEITTENAFRCFSKMTRV
>Mature_260_residues
MLIDTHCHLDFPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVFCSVGTHPNNADEELDISADELVR
LAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIEAARRTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAG
PELAKAGVELGGYVSFSGILTFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGVSFE
HMAEITTENAFRCFSKMTRV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=32.089552238806, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=32.6086956521739, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=31.7164179104478, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI226061614, Length=261, Percent_Identity=31.0344827586207, Blast_Score=121, Evalue=8e-28,
Organism=Homo sapiens, GI226061595, Length=234, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI14042943, Length=263, Percent_Identity=25.4752851711027, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI225903424, Length=234, Percent_Identity=29.4871794871795, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI225903439, Length=236, Percent_Identity=25.8474576271186, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=40.4669260700389, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=30.8880308880309, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=27.9693486590038, Blast_Score=121, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=282, Percent_Identity=29.0780141843972, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=31.9391634980989, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17543026, Length=185, Percent_Identity=31.3513513513514, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17565396, Length=209, Percent_Identity=29.6650717703349, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648690, Length=284, Percent_Identity=29.2253521126761, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24586117, Length=273, Percent_Identity=24.9084249084249, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI221330018, Length=273, Percent_Identity=24.9084249084249, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28851; Mature: 28851

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDTHCHLDFPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVFCSV
CEEECEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GTHPNNADEELDISADELVRLAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIEAAR
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHH
RTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAGPELAKAGVELGGYVSFSGIL
HCCCCEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCEEEECEEE
TFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGVSFE
ECCCCCCHHHHHHHCCHHHHHEECCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHCCCHH
HMAEITTENAFRCFSKMTRV
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIDTHCHLDFPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVFCSV
CEEECEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GTHPNNADEELDISADELVRLAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIEAAR
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHH
RTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAGPELAKAGVELGGYVSFSGIL
HCCCCEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCEEEECEEE
TFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGVSFE
ECCCCCCHHHHHHHCCHHHHHEECCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHCCCHH
HMAEITTENAFRCFSKMTRV
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]