Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is nudK [H]
Identifier: 159184632
GI number: 159184632
Start: 1127100
End: 1127729
Strand: Direct
Name: nudK [H]
Synonym: Atu1137
Alternate gene names: 159184632
Gene position: 1127100-1127729 (Clockwise)
Preceding gene: 159184631
Following gene: 15888479
Centisome position: 39.66
GC content: 59.21
Gene sequence:
>630_bases GTGACACAAACGCAGGCGAAAAACGTTCCGGCCGACATCGATTCCGGCAGAATCCGGCTCGTGGAAAAAGAAACGGTGTG GAAGGGCTTCGTGCATATGCAGAAGCTCATTTTCGACCAGCGCATGCCGGATGGCAGGACGATGCGCATCGTGCGGGAAG TGCATGACCATGGCAGCGCCGCCGCCATTCTTCTTTATGACGTGAAACGCGACAGCGTGGTGATGGTTCGCCAGTTCCGC CCCGCCGCTTTCGTGAACGGTGATCAGAGCTTCATGATCGAGGTGCCGGCGGGGCTTCTCGATGACGACGATGCTGCCGA TGCCATTCGCCGCGAGGCGATGGAGGAATCCGGTTACGCGGTCGAAAAGGTCGAGTATCTCTTCGACATGTATGCGAGCC CCGGCACACTGACGGAGAAGGTCAGCCTCTTCGTCGCGCGCATCGACCTCGACGTGCAGGCCGGCAACGGCGGCGGGCTG GAGGACGAAGGCGAGGATCTGGAGGTTCTGACCTATGGCCTCGACGAGGCCTTCGCGATGATCGCCTCAGGTGAAATCAC AGATTCCAAGACGATCATCCTGCTGCAATGGGCGATGTTGAATCGCGACCGTCTTCTTTCCAGAGCGTAA
Upstream 100 bases:
>100_bases AAAGTATGGCTCCGCCGCGGCGACGAGGCCGGCGAGGCTTGATATTGCGCCGCCATACAGACAATCTGAAGCAACCCCAC GACAGGCAAGGACATATCCG
Downstream 100 bases:
>100_bases TTTCATCCGCGGTTACGTTTGAGCGCCCTGAGCGCTCGGCCCGTATAGCGGCAATGAGCTTTGGGCGGGTCTGAGGGGTG CTGACTTTGACCAGACACGC
Product: MutT family NTP pyrophosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MTQTQAKNVPADIDSGRIRLVEKETVWKGFVHMQKLIFDQRMPDGRTMRIVREVHDHGSAAAILLYDVKRDSVVMVRQFR PAAFVNGDQSFMIEVPAGLLDDDDAADAIRREAMEESGYAVEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGNGGGL EDEGEDLEVLTYGLDEAFAMIASGEITDSKTIILLQWAMLNRDRLLSRA
Sequences:
>Translated_209_residues MTQTQAKNVPADIDSGRIRLVEKETVWKGFVHMQKLIFDQRMPDGRTMRIVREVHDHGSAAAILLYDVKRDSVVMVRQFR PAAFVNGDQSFMIEVPAGLLDDDDAADAIRREAMEESGYAVEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGNGGGL EDEGEDLEVLTYGLDEAFAMIASGEITDSKTIILLQWAMLNRDRLLSRA >Mature_208_residues TQTQAKNVPADIDSGRIRLVEKETVWKGFVHMQKLIFDQRMPDGRTMRIVREVHDHGSAAAILLYDVKRDSVVMVRQFRP AAFVNGDQSFMIEVPAGLLDDDDAADAIRREAMEESGYAVEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGNGGGLE DEGEDLEVLTYGLDEAFAMIASGEITDSKTIILLQWAMLNRDRLLSRA
Specific function: Catalyzes the hydrolysis of GDP-mannose [H]
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
Organism=Escherichia coli, GI1788810, Length=182, Percent_Identity=42.8571428571429, Blast_Score=154, Evalue=5e-39, Organism=Escherichia coli, GI1789412, Length=200, Percent_Identity=30.5, Blast_Score=116, Evalue=1e-27, Organism=Drosophila melanogaster, GI24650557, Length=173, Percent_Identity=30.0578034682081, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004385 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: NA
Molecular weight: Translated: 23347; Mature: 23216
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTQAKNVPADIDSGRIRLVEKETVWKGFVHMQKLIFDQRMPDGRTMRIVREVHDHGSA CCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE AAILLYDVKRDSVVMVRQFRPAAFVNGDQSFMIEVPAGLLDDDDAADAIRREAMEESGYA EEEEEEECCCCCEEEEEECCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCH VEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGNGGGLEDEGEDLEVLTYGLDEAFAM HHHHHHHHHHHCCCCCHHHHHEEEEEEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHH IASGEITDSKTIILLQWAMLNRDRLLSRA HCCCCCCCCCEEEEEEEEHHCHHHHHHCC >Mature Secondary Structure TQTQAKNVPADIDSGRIRLVEKETVWKGFVHMQKLIFDQRMPDGRTMRIVREVHDHGSA CCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE AAILLYDVKRDSVVMVRQFRPAAFVNGDQSFMIEVPAGLLDDDDAADAIRREAMEESGYA EEEEEEECCCCCEEEEEECCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCH VEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGNGGGLEDEGEDLEVLTYGLDEAFAM HHHHHHHHHHHCCCCCHHHHHEEEEEEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHH IASGEITDSKTIILLQWAMLNRDRLLSRA HCCCCCCCCCEEEEEEEEHHCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA