Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 15888479

GI number: 15888479

Start: 1130984

End: 1132141

Strand: Direct

Name: perM [C]

Synonym: Atu1142

Alternate gene names: 15888479

Gene position: 1130984-1132141 (Clockwise)

Preceding gene: 159184632

Following gene: 15888480

Centisome position: 39.8

GC content: 57.94

Gene sequence:

>1158_bases
ATGCAACCCCATGTGAGCGGCACGAGTCTGCGCCGACAGGTGTTTTTCTGGATTGGCGTGCTTGCCGTCTTTGTCCTCTT
CCTGATGGTTTTCAGCTCCATTCTGCTGCCTTTCGTGGCGGGCATGGCGCTTGCCTATTTTCTCGATCCGGTGGCCGACT
GGCTGGAGCGGCGGGGTTTGAGCCGGTTGATGGCGACCGTCGTCATCCTCGTTTCCTTCGTGCTGATCTTTGCGCTGTCG
CTCATCATCATCATTCCGCTGATCGTCGCCCAGGCATCGGAATTCATCACACGCATCCCGCAATATATCTCTTCGTTGCA
GCAGCTGATCGCCGGTGCAGATACCAATCTTCTGCCGGATTGGGTGAGCGGCCAGATCAACTCGGTAAAGGAGAATTTTT
CAAAGCTCCTGACCGAGGGCGCTGGTTTCATCGGCACGCTTTTGACGCAGATATGGAATTCCGGCAAATCGCTGGTCGAT
GTCCTGTCGCTTCTGGTCGTCACGCCCGTCGTCGCCTTTTATCTGCTGCTCGACTGGGACCGGATGATCGACAAGGTCGA
CAGCTGGATCCCGCGTGACTACGTGCATACCGTCCGCCAGATTGCTCGCGACATGGACAAGACGATTGCCGGCTTCGTGC
GCGGGCAGGGGTCGCTCTGCCTCATTCTCGGGGTTTATTATGCCGTCGGCCTGTCGTTGGTGGGCCTGAATTTCGGTCTG
CTGATCGGCCTTTTCTCCGGCCTCATCAGCTTCATTCCCTATATCGGCTCCATGGTCGGCCTCATCCTCGCGGTCGGCGT
CGCCATCGTGCAGTTCTGGCCGGACTATATCTATGTCTTCCTGACGCTCGTCGTGTTCTTTTCCGGCCAGTTCATCGAAG
GCAACATCCTGCAACCGAAGCTTGTCGGCAAAAGCGTCGGCCTGCATCCGGTCTGGCTGATGTTCGCGCTCTTCGCTTTC
GGTGCGCTTTTCGGTTTCGTCGGCCTTCTGGTCGCGGTTCCCGCTGCCGCTGCGGTCGGCGTGCTTGTCCGCTTTGCATT
GTCGCGGTATCTTGAAAGCGATCTTTACCATGGGCACGCCGCCAATCTTCCCTGGGACGCCAACCCTGCCCTGGAAGAAC
GGGAAGCGTCCGCTGGTAAGATTGACTCTCAGAGCTGA

Upstream 100 bases:

>100_bases
AGTCGTCCATGGCTTTGATGCTGCAGTCTTGACCATATGCATATGCGCATCCTATCTCCATGATGGGCGATGACGGCATC
GGCGACAGAAGGATGAACGA

Downstream 100 bases:

>100_bases
CGATGACTGACCAAATCAAAACCGACAACGCCCGGTCGAAGGCCGAGCAGCTGCCGCTCGCATTTTCGCACCAGTCCGCT
TCCGGCAGGGAGGATCTCCT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MQPHVSGTSLRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERRGLSRLMATVVILVSFVLIFALS
LIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQINSVKENFSKLLTEGAGFIGTLLTQIWNSGKSLVD
VLSLLVVTPVVAFYLLLDWDRMIDKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGL
LIGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKLVGKSVGLHPVWLMFALFAF
GALFGFVGLLVAVPAAAAVGVLVRFALSRYLESDLYHGHAANLPWDANPALEEREASAGKIDSQS

Sequences:

>Translated_385_residues
MQPHVSGTSLRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERRGLSRLMATVVILVSFVLIFALS
LIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQINSVKENFSKLLTEGAGFIGTLLTQIWNSGKSLVD
VLSLLVVTPVVAFYLLLDWDRMIDKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGL
LIGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKLVGKSVGLHPVWLMFALFAF
GALFGFVGLLVAVPAAAAVGVLVRFALSRYLESDLYHGHAANLPWDANPALEEREASAGKIDSQS
>Mature_385_residues
MQPHVSGTSLRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERRGLSRLMATVVILVSFVLIFALS
LIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQINSVKENFSKLLTEGAGFIGTLLTQIWNSGKSLVD
VLSLLVVTPVVAFYLLLDWDRMIDKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGL
LIGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKLVGKSVGLHPVWLMFALFAF
GALFGFVGLLVAVPAAAAVGVLVRFALSRYLESDLYHGHAANLPWDANPALEEREASAGKIDSQS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=318, Percent_Identity=30.5031446540881, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI87082271, Length=305, Percent_Identity=23.6065573770492, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42183; Mature: 42183

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]