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The map label for this gene is fliN

Identifier: 159184368

GI number: 159184368

Start: 547646

End: 548185

Strand: Direct

Name: fliN

Synonym: Atu0562

Alternate gene names: 159184368

Gene position: 547646-548185 (Clockwise)

Preceding gene: 159184367

Following gene: 15887909

Centisome position: 19.27

GC content: 57.41

Gene sequence:

>540_bases
ATGGCTACGAAGAAAACACCTGTGACCGATGATGCGGCGTTGCCGTCGTTTGAAGACGGCGTCGACCTCGACCAGGCTAT
CGGCGATCTGCGTGGCGTCCTCAAGACGGATGCGGAAGGTTCGCTCTCCGATTTTGGCGACTTCGGCGATTTCGGAAGCA
CGGACGAGGTTTCGACAGACAATGACCTTTCCGCCTTCGGTGGCGGAGCGGCGGATTTTGCGATGGACGATTTTGCCGCC
GCCCCGCAGGTCGCGGGCGTGAAGGCACCGCTTGGCAGCGGCTTGTCCGAAAATATGGAAATGATCATGGACATCCCGAT
CGATGTCCAGATCGTTCTCGGCACCAGCAGAATGCTCGTTTCGGGGCTGATGAGCCTCGAAGAGGGTGCGACGATCGCGC
TTGATCGCAAGATTGGCGAGCCCGTCGAAATCATGGTGAATGGCCGCCGTATTGCGCGCGGTGAAATAACGGTTCTGGAA
GACGACGATACGCGCTTCGGCGTAAAATTGATTGAAGTACTGAGTACGCGAAAAGCCTGA

Upstream 100 bases:

>100_bases
CACGGACGACGAGATCTTACGACATTTGATGGGTTAAATCCTGCCCGGCCTTTTGGGTTTTGGGCAGGCTGACGCAAGTT
TCAAAGGGAATAATCAGCGC

Downstream 100 bases:

>100_bases
TCCCTGTGGGGACGGAGAGGAAAGACCATGATGGACTTCGAGGATTTCGGTAATCCCCTTGCGGGCAAGCCGTTGTCTCA
GGCCGACAAGGCGGCCGCGG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAA
APQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLE
DDDTRFGVKLIEVLSTRKA

Sequences:

>Translated_179_residues
MATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAA
APQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLE
DDDTRFGVKLIEVLSTRKA
>Mature_178_residues
ATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAAA
PQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLED
DDTRFGVKLIEVLSTRKA

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family

Homologues:

Organism=Escherichia coli, GI1788256, Length=83, Percent_Identity=37.3493975903614, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIN_AGRT5 (Q57259)

Other databases:

- EMBL:   X65584
- EMBL:   U63290
- EMBL:   U95165
- EMBL:   AE007869
- PIR:   AE2645
- PIR:   E97427
- PIR:   S21380
- RefSeq:   NP_353589.2
- ProteinModelPortal:   Q57259
- SMR:   Q57259
- STRING:   Q57259
- GeneID:   1132600
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0562
- eggNOG:   COG1886
- HOGENOM:   HBG536886
- OMA:   IMDIPID
- PhylomeDB:   Q57259
- ProtClustDB:   CLSK800146
- BioCyc:   ATUM176299-1:ATU0562-MONOMER
- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543
- PRINTS:   PR00956
- TIGRFAMs:   TIGR02480

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 18803; Mature: 18672

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC
NDLSAFGGGAADFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLV
CCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEECCCCEEEEEECCHHHHH
SGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTRKA
HHHHHHCCCCEEEEECCCCCCEEEEECCEEEECCEEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTD
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC
NDLSAFGGGAADFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLV
CCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEECCCCEEEEEECCHHHHH
SGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTRKA
HHHHHHCCCCEEEEECCCCCCEEEEECCEEEECCEEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9161425; 11743193; 11743194