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The map label for this gene is fliM

Identifier: 159184367

GI number: 159184367

Start: 546623

End: 547582

Strand: Direct

Name: fliM

Synonym: Atu0561

Alternate gene names: 159184367

Gene position: 546623-547582 (Clockwise)

Preceding gene: 15887906

Following gene: 159184368

Centisome position: 19.24

GC content: 58.33

Gene sequence:

>960_bases
ATGGCAAAAGCTGCAGCGCAGAAAGCCTCCGCCCCCACCATCGACACCGCCCTGCTCGCGAAACTTACGGGAGGGCTCAC
CGACCGCAAGACGATCGCGAAGATCGGTGCGGACATCGGCCATCTCTATAGCGAATTCCTGCCGGATACCTTTCACAGCG
AGACCGGCATTGCGATCGACGTCGAATATATCGGTTCCGAATCGGGGCTGATGACCGATCTCATCGCCAATGTCGGGCAG
AATGTTGCGGTTGCCGATTGTTCGCTGCGCAACTGGTGCCCCAATTTCATGATGGCGGTCGGCAACGGCTTCGTCATTGC
GCTGATGGAGCGCATGCTGGGTGCGTCGCCCGATAGTATCGGCGACCCGGACGAGCGCAACCTGTCCCATATCGAGCTCG
ATCTCGCGGCGATGGTTCTCGGCCGTATCGCCGGTGTCCTGCGCTCCGGTGTCAATGCGCCGGGTGGCTTCGAAGCGACG
ATCGATCCGCCGTTCAATGCCAATGGAAAAAGCGCCTTCGACGAGATGATCGCCGGCCTTTACGGCGTGACCATCCGCAT
GAAGATCGATATCGGCAAGGTATCCTCGGAATTTTCTCTCATCGTGCCGCAGCGGCCGCTGCTCAAGACCTCCATCGTCG
CCCCCAAGGCTTCAGCCCAGGCGCTGAAGAAGCAGGAGGAATGGATGGATATGATCTCGCAGCAGGTGAAGAGATCGCAG
GTCACGCTTGAGGCGCGCATCAAGCTCGAAACGCTGACGCTGCGGACGATTTCCAGGCTGGTGGCTGGCGATGTCATTCC
GTTTCAGGATCTGAAGCAGGATGATATCGGCGTCGAGGTCAGCGCCAACGGCTCCAAGCTCTATAATTGCGAATTCGGCA
AGTCAGGCGACCGCTACATGGTTCGGGTGAAGAACAATGTCAGCACGGACGACGAGATCTTACGACATTTGATGGGTTAA

Upstream 100 bases:

>100_bases
AATATGGCCGCAAGACCATCTCCAACTATGAACGGCCGTCCATCGATGCCGTCGAGCAGGAGATGATGAATCCCGGCGGC
GAAAACAAGGCGGCATGATC

Downstream 100 bases:

>100_bases
ATCCTGCCCGGCCTTTTGGGTTTTGGGCAGGCTGACGCAAGTTTCAAAGGGAATAATCAGCGCATGGCTACGAAGAAAAC
ACCTGTGACCGATGATGCGG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MAKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIANVGQ
NVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEAT
IDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQ
VTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHLMG

Sequences:

>Translated_319_residues
MAKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIANVGQ
NVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEAT
IDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQ
VTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHLMG
>Mature_318_residues
AKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIANVGQN
VAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEATI
DPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQV
TLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHLMG

Specific function: FliM is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1868

COG function: function code N; Flagellar motor switch protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliM family

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIM_AGRT5 (Q44457)

Other databases:

- EMBL:   U63290
- EMBL:   U95165
- EMBL:   AE007869
- PIR:   AD2645
- PIR:   D97427
- RefSeq:   NP_353588.2
- ProteinModelPortal:   Q44457
- STRING:   Q44457
- GeneID:   1132599
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0561
- eggNOG:   COG1868
- HOGENOM:   HBG299719
- OMA:   CEFGRSG
- ProtClustDB:   CLSK800145
- BioCyc:   ATUM176299-1:ATU0561-MONOMER
- InterPro:   IPR001543

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 34389; Mature: 34258

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAID
CCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEE
VEYIGSESGLMTDLIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSI
EEEECCCCCHHHHHHHHCCCCEEEECCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCC
GDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
YGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQ
HCEEEEEEEEECCCCCCCEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYM
EEEEEEEEEEHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCEEEEECCCCCCCEEE
VRVKNNVSTDDEILRHLMG
EEECCCCCCHHHHHHHHCC
>Mature Secondary Structure 
AKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAID
CCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEE
VEYIGSESGLMTDLIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSI
EEEECCCCCHHHHHHHHCCCCEEEECCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCC
GDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
YGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQ
HCEEEEEEEEECCCCCCCEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYM
EEEEEEEEEEHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCEEEEECCCCCCCEEE
VRVKNNVSTDDEILRHLMG
EEECCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9161425; 11743193; 11743194