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The map label for this gene is ygjR [C]

Identifier: 159184238

GI number: 159184238

Start: 263264

End: 264247

Strand: Direct

Name: ygjR [C]

Synonym: Atu0266

Alternate gene names: 159184238

Gene position: 263264-264247 (Clockwise)

Preceding gene: 15887611

Following gene: 159184239

Centisome position: 9.26

GC content: 57.72

Gene sequence:

>984_bases
ATGCTGCGCTTCGGAATAATCTCAACGGCGAAAATCGCTCAGGATCACGTCATTCCGGCGATACAGGATGCGGAAAACTG
CGTGGTCAGTGCCATCGCCAGCCGCGATCACGCCAGAGCGCGCGCGGTTGCCGAGCGTTTTTCCGTGCCTCATGCCTTCG
GTTCCTATGAGGAGATGCTCGCATCGGATGTGATCGATGCGGTCTATATTCCGCTTCCCACCGCGCAACATGTGGAGTGG
ACGATCAAGGCCGCCAATGCCGGCAAACATGTTCTCTGCGAAAAGCCGATTGCGTTGAAGGCAGAAGAGATCGATACGCT
CATCGCTGCGAGGGACCGCAATGGTGTCATCGTGTCCGAGGCTTTCATGGTCACCTATTCCCCTGTTTGGGCCAAGGTGA
AGGAATTGCTGGCGTCGGGCGCCATCGGTACACTGAAACATGTGCAGGGCGCTTTCAGCTATTTCAATCGGGATCCCGGC
AATATGCGCAATATTCCCGAATTGGGTGGTGGGGCGCTGCCTGATATCGGCGTCTACCCGACCATCGTTACCCGCTTCGC
CACCGGCGCCGAGCCCAGGCGCGTGCAGGCCACGGTGGAGCGTGACAGGGAATTCGGCACCGATATCTATTCCAGCGTCC
GGGCCGATTTCGGCACGTTCGAGCTGAGCTTCTATCTGGCAACCCAGCTTGCCTCCCGTCAGCTCATGGTCTTCCACGGC
ACCGATGGCTACATCGAGGTCAAATCTCCGTTCAACGCCAATCGCTGGGGGGCTGAGGAAATCGAACTGACCAATCAGGC
CCATAACCAGTCGCAGGTCTTCCGGTTTCAGGATAGCCGTCAGTACAAGCTCGAGGCGGAGGCCTTTGCCCGTGCGGTGA
GAGGCGAGGGAGAGGTCGTTACTTTGGAAAATTCGAGGAAGAACCAGCTTTTCATCGACGCCATCTACCGCGCGGCGGAA
AAGGATGGTTGGGAAACGGTTTAA

Upstream 100 bases:

>100_bases
AGGACAAATCCGGCCATACCTTATCTCGTTGCCTGCCGGCGGCTTGCCAGCTCCTGCGATGGTGATAAGTTTCCGGCAAA
TGGCAGAGTGGGAGAATGGA

Downstream 100 bases:

>100_bases
GTCCGCTGTTTTTGCAGCCGAAAATATCCGTAAAGCGCCAGGACCAATGCTGCGATCGCTGAAAGTGCGAGCGGGATGAA
CGGCTGCAAAAGCGGGTTGC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLRFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLASDVIDAVYIPLPTAQHVEW
TIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGVIVSEAFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPG
NMRNIPELGGGALPDIGVYPTIVTRFATGAEPRRVQATVERDREFGTDIYSSVRADFGTFELSFYLATQLASRQLMVFHG
TDGYIEVKSPFNANRWGAEEIELTNQAHNQSQVFRFQDSRQYKLEAEAFARAVRGEGEVVTLENSRKNQLFIDAIYRAAE
KDGWETV

Sequences:

>Translated_327_residues
MLRFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLASDVIDAVYIPLPTAQHVEW
TIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGVIVSEAFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPG
NMRNIPELGGGALPDIGVYPTIVTRFATGAEPRRVQATVERDREFGTDIYSSVRADFGTFELSFYLATQLASRQLMVFHG
TDGYIEVKSPFNANRWGAEEIELTNQAHNQSQVFRFQDSRQYKLEAEAFARAVRGEGEVVTLENSRKNQLFIDAIYRAAE
KDGWETV
>Mature_327_residues
MLRFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLASDVIDAVYIPLPTAQHVEW
TIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGVIVSEAFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPG
NMRNIPELGGGALPDIGVYPTIVTRFATGAEPRRVQATVERDREFGTDIYSSVRADFGTFELSFYLATQLASRQLMVFHG
TDGYIEVKSPFNANRWGAEEIELTNQAHNQSQVFRFQDSRQYKLEAEAFARAVRGEGEVVTLENSRKNQLFIDAIYRAAE
KDGWETV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=257, Percent_Identity=29.1828793774319, Blast_Score=106, Evalue=3e-23,
Organism=Escherichia coli, GI145693182, Length=232, Percent_Identity=31.8965517241379, Blast_Score=97, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24581117, Length=256, Percent_Identity=30.46875, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24581115, Length=269, Percent_Identity=24.907063197026, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584727, Length=265, Percent_Identity=24.9056603773585, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36242; Mature: 36242

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEML
CEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ASDVIDAVYIPLPTAQHVEWTIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGVIVSE
HHHHHHHEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHEECCCCCEEEEE
AFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPGNMRNIPELGGGALPDIGVYP
EEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
TIVTRFATGAEPRRVQATVERDREFGTDIYSSVRADFGTFELSFYLATQLASRQLMVFHG
HHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEHHHHHHHHCCCEEEEEEC
TDGYIEVKSPFNANRWGAEEIELTNQAHNQSQVFRFQDSRQYKLEAEAFARAVRGEGEVV
CCCEEEECCCCCCCCCCCHHHHHHHHCCCCHHEEEECCCCCEEEHHHHHHHHHCCCCCEE
TLENSRKNQLFIDAIYRAAEKDGWETV
EEECCCCCEEHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEML
CEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ASDVIDAVYIPLPTAQHVEWTIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGVIVSE
HHHHHHHEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHEECCCCCEEEEE
AFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPGNMRNIPELGGGALPDIGVYP
EEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
TIVTRFATGAEPRRVQATVERDREFGTDIYSSVRADFGTFELSFYLATQLASRQLMVFHG
HHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEHHHHHHHHCCCEEEEEEC
TDGYIEVKSPFNANRWGAEEIELTNQAHNQSQVFRFQDSRQYKLEAEAFARAVRGEGEVV
CCCEEEECCCCCCCCCCCHHHHHHHHCCCCHHEEEECCCCCEEEHHHHHHHHHCCCCCEE
TLENSRKNQLFIDAIYRAAEKDGWETV
EEECCCCCEEHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]