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The map label for this gene is ycjZ [H]

Identifier: 15887611

GI number: 15887611

Start: 259145

End: 260035

Strand: Direct

Name: ycjZ [H]

Synonym: Atu0261

Alternate gene names: 15887611

Gene position: 259145-260035 (Clockwise)

Preceding gene: 15887609

Following gene: 159184238

Centisome position: 9.12

GC content: 61.62

Gene sequence:

>891_bases
ATGAACCGTGTGCAACTCTCCCAGCTGGCAGTTCTCGCCGCCGTCGCCGAAGGCCGCAGCTTCCGCAAGGCCGCCGCCGA
GCTGGCCATTGCGCCTTCCGCCGTCAGCCATGCGGTATCATCTCTTGAGGCAAGCCTGGGCCTACGCCTGCTGCATCGTA
CCACCCGCAGCGTTTCACCGACAGAGGAGGGCAGGCAGCTCCTAGAGACACTGGGTCCAGCGCTTGCCGACATTGATGCG
GTTATCGAGACCCTTGCCGAGCATGGTGGAAGACCCGCTGGCCCCCTGCGCATCACCTTGCCGAGACTGGCCGCCGAGGA
TCTCATCGTGCCACGGCTGGGTGAATTCCTCCGACTTTATCCCGATATTTCCCTCGAAATCTCAACGGATGATCGCTTCG
AAGACATTGTCGCGAAGGGTTTCGATGCCGGTCTGCGTCTCGGAGAACATCTCGATGCGGATATGATTGCGGTGAAGGCG
AGCGGCGCATGGCGCGGGGCGATCGTCGGCGCTCCCGCCTATTTCGCGGAAAATGCACCGCCGCGCGAGCCAAGAGATCT
CATCCGCCATCGCTGTATTCGCCGGCGCTTCTCCAGTGGCCTGATCTATCGCTGGGAACTGGAGAAAAACGGCAAGCCAC
TGGTGGTTGATGTTCAAGGGCCGCTGATCCTGTCGGACCAGAGCCTCATTCGTCGGGCGGCAATCGACGGCGCAGGGCTC
GCCTTTGTTTTCGAGCAGCGCGTTGAGGAAGATATCGCGGAAGGCCGGCTCATCCGCGTGCTGGAAGACTGGTGCGCACC
CTTCGACGGCTTTTATATTTATTATCCCTCGCGCCGGCAGATGCGCCCGGCGCTGAGGGCCTTCGTGGATTTCTTCCGCT
TCCGCGGTTGA

Upstream 100 bases:

>100_bases
AAGGAACCGCCCGTCATCAGGGCGTGATCAGAAAATAGCGTCTCATGGCGGTAAAAATAATCGCTGCAAATCCGCTTGGG
TTGTTCTATCATTTAGAACA

Downstream 100 bases:

>100_bases
TCAGAACGTGATGCGATAGCGGATATGCCCGTCGCTCTTCACGTAGTTGTCGTAAAGCTTCTGGGCGCGGTGATTGCCTT
CGTCGGTGTTCCAGTAAAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQLLETLGPALADIDA
VIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKA
SGAWRGAIVGAPAYFAENAPPREPRDLIRHRCIRRRFSSGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGL
AFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG

Sequences:

>Translated_296_residues
MNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQLLETLGPALADIDA
VIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKA
SGAWRGAIVGAPAYFAENAPPREPRDLIRHRCIRRRFSSGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGL
AFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG
>Mature_296_residues
MNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQLLETLGPALADIDA
VIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKA
SGAWRGAIVGAPAYFAENAPPREPRDLIRHRCIRRRFSSGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGL
AFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=41.7508417508418, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=40.2061855670103, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.8611111111111, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=28.3216783216783, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.0341296928328, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=27.0833333333333, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=27.3037542662116, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789173, Length=283, Percent_Identity=28.9752650176678, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=25.5172413793103, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788706, Length=145, Percent_Identity=33.7931034482759, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788748, Length=139, Percent_Identity=33.8129496402878, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32808; Mature: 32808

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSP
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEEGRQLLETLGPALADIDAVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLY
CHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
PDISLEISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAP
CCCEEEECCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCHHHCCCCC
PREPRDLIRHRCIRRRFSSGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGL
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHCCCCCH
AFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSP
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEEGRQLLETLGPALADIDAVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLY
CHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
PDISLEISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAP
CCCEEEECCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCHHHCCCCC
PREPRDLIRHRCIRRRFSSGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGL
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHCCCCCH
AFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]