| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is ygaD [H]
Identifier: 15889834
GI number: 15889834
Start: 2550040
End: 2552757
Strand: Direct
Name: ygaD [H]
Synonym: Atu2577
Alternate gene names: 15889834
Gene position: 2550040-2552757 (Clockwise)
Preceding gene: 15889832
Following gene: 159185274
Centisome position: 89.74
GC content: 56.84
Gene sequence:
>2718_bases ATGGAACAAAGCCTTACGCGTTATATCTGGTCGCACACGAGGCGGCAGCAGCTTTTCATTCTGCTGATCGTGGCCCTGTC CATGATCCCCTATTTTCTCGCCTTCGATCTGCCCAAACAGATCGTCAATGGGCCTATCCAAGGGGACGGCTTCGAAGGGG CGAACGCAACGCAGCTCTTCATGCATCTCACGGTCGATATTCCCTATTGGGGCACCGTGACGCTCTTCCCCGGGATCGAA CTCAACCGCATGTCGATGCTGATGGGGCTCAGCCTGACATTCCTTGCACTCGTCATCATCAACGGGCTCTTCAAATATTA CATCAACACCTACAAGGGCCGCCTTGGCGAGCGGCTTCTCAGGCGTATACGTTTCGAACTTATTGACCGGATTTTGCGTT TCCCGCCCACGCATTTCAAGCGGGTAAAAGGCGCTGAAATCTCCAGTATGGTGAAGGACGAGGTGGAACCGCTCGGCGGC TTTACCGGCGATGCCTTCGTACAGCCGGCGCTTCTCGGCGGCCAGGCACTCTCCGCGCTCTTCTTCATTCTCGTGCAGAA TTTATGGCTCGGTCTGATCGCGGCTTTCATGGCCGCCATACAGGTCGGCATCATCCCCAAAATGCGCCGCCGCCTCATCG AACTTGGCCGCCAGCGGCAGTTGAGCGCGCGCCAGCTTGCCGGACGTATCGGCGAGATGGTCGATGGTATCGGCACCATC CACGCCTATGACACATCTAATTTCGAGCGCGCCGATGCCTCACACCGGCTCGGCGACATCTTCAAGATCCGTTACGATCT CTACCAGTGGAAGTTTCTGGTCAAGTTTATCAATAACTTCCTCGCGCAGCTCACGCCCTTCTTCTTTTATGCGCTCGGTG GTTATCTGACCCTTAAGGGCAGCCTTGATGTCGGCCAGCTTGTCGCCGTCATCAACGCCTATAAGGAACTGCCGGGACCG CTGAAGGAACTGATCGACTGGGATCAGGCGCGACAGGATGTCCAGGTAAAATACGAGCAGGTCTTCGAACAGTTCAATAC GCCGAACATGATCGACGACAAGGTGCAGAAACTGTCCCCGGGAACCGTCGCGGCAATCACCGCGCCGCTCGTCATCGCCA ATCTGACGCTCGAGGATGATAGCGGCAGCCGGCTTCTGGAGCAGGCGTCGCTCAAGATCGAGCCGGGCGAGGTGATCGCC ATCGTCGGCGGCTCGGGAGCCGAGGCGCTGGCGGATGCGATCGGCCGCACACTCTGGCCGACCTCAGGCAAGGTCAGCAT CAACGATGTCGACATATTGGAACTGCCGGAGTCGCTCACCGGGCGGCGAATTTCCTATGTCTCGTCGGACAGTTATTTTT TCCACGCCAGCCTGAAGGACAATCTTCTTTACGGCCTCAAACATGCGCCGCTTGCGGAAAAGAACTACGAAGGCGCTGCG CTGGAGCATCGCAAGTGGGAAATCCGCGAAGCCAAGATGGCGGGCAATCCGCTGATCGACATCAACAGCGAATGGATCGA CTACGCCTCGAGCCCGGCCGGCGACGGCAAGCCGGAGAACCTCATCCAGGCCGTTCTGGCCGTGCTCGACAGCGTGGAAT TGTCACAGGATATTCTGGAATTTGCCCTGCGCTCGTCGATCGATCCTCTGACCGATCTGCATCTTGCCGCCCGCATCGTG GAACTGCGGCATGTGCTGCGCGCCGAACTTGAAAAGGAAAATCTGAGCGGCCTCATCGCGCCCTTCGAACTGGAGAGCTA CAATAGCGAAGCGACAGTCGGTGAAAACCTGTTGTTCGGCACCATGCGGGATTCTTCCCAGACGATCAGGACCGTCATCG AGAGCGACTATTTCCGATCGCTGATGCGCGAAACCGGCCTCGTCAAAACCCTGTTCGAAATGGGATACACGATTGCCGAA AACATCGTGGAAATCTTTGCCGACCTGCCGGGAGACCACCCCTTCTTCCAGCAGCTCACCTTCATGACGCCCGATGACAT TCCAGTCTATCAGCAGATGATGCAACGGCTTCAGGGAAAGAGTTTCGACGAGGCCAATGAAAGCGAAAAGCGCGCGATGC TGCGGCTGAGCTTCTTCTACATAGAACCTCGCCAGCGTTTCGGCCTGCTGTCACCGGAAATCATGAACCGGATCGTCGAA GTTCGGCACATGTTCCACGAAAACCTGCCCGACAGCCTGAAAAACGTGATCGAAATCTACGATCCGACCAAATACATGAG CGCCACCAGCCTTCTGGATAATATTCTCTTCGGCAAGGTGAGCCATCGTTATACCGACGCCTCGCGGCGCATTACCCGAA TTGTCGCGGATGTCATGCGCAAGCAGGGCGTCTATGAGCGCGTGTTGGCGGTGGGGCTGGATTTCAACCTGGGTGCCGGC GGCAAGCGGCTTGGACCGCTTCAGCGCCAGAAGCTCAATCTCGCGCGGGCGCTGATCCGCAAATCCGATTATTATGTCTT CAACCGCCCCCTTCCCGGTCTTGATCCCCGACAGCAGGAGGAAATTGTCGAACGGGTCATCACACTCCTGAAACAGAATA ACAATAACCCCTCGATCGTGTGGGTTCTGTCGAATGCGCACCTCTCACGCATGTTCGAGCGGGTGATCGTCGTTCATCAG GGCCTGATCACGGCTGACGGAAGTTACGAGACTCTCGCCGAGGAAAACGGTACATTCAAGGACATGGTCGCGACATAA
Upstream 100 bases:
>100_bases TTATTTGCAGGAGGAGGTTGCGCCACCCGGCCACCGGATTGTCTAGACACCGCGCAAACCAACACGCCGGGCCTCGCCCG CCAGGTCATAGAAGTTTTAT
Downstream 100 bases:
>100_bases ATCCAAGAATGTGACCGAGGTGGAACAAGAACAGGGTAAGGCAATGCTGTTTAAAGACGAAATTCAGATGTTGAAAAGGG TTCCGTTTTTCTCGGAAATG
Product: ABC transporter, nucleotide binding/ATPase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 905; Mature: 905
Protein sequence:
>905_residues MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLFMHLTVDIPYWGTVTLFPGIE LNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLLRRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGG FTGDAFVQPALLGGQALSALFFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKGSLDVGQLVAVINAYKELPGP LKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSPGTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIA IVGGSGAEALADAIGRTLWPTSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILEFALRSSIDPLTDLHLAARIV ELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFGTMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAE NIVEIFADLPGDHPFFQQLTFMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMRKQGVYERVLAVGLDFNLGAG GKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQEEIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQ GLITADGSYETLAEENGTFKDMVAT
Sequences:
>Translated_905_residues MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLFMHLTVDIPYWGTVTLFPGIE LNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLLRRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGG FTGDAFVQPALLGGQALSALFFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKGSLDVGQLVAVINAYKELPGP LKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSPGTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIA IVGGSGAEALADAIGRTLWPTSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILEFALRSSIDPLTDLHLAARIV ELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFGTMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAE NIVEIFADLPGDHPFFQQLTFMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMRKQGVYERVLAVGLDFNLGAG GKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQEEIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQ GLITADGSYETLAEENGTFKDMVAT >Mature_905_residues MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLFMHLTVDIPYWGTVTLFPGIE LNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLLRRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGG FTGDAFVQPALLGGQALSALFFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKGSLDVGQLVAVINAYKELPGP LKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSPGTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIA IVGGSGAEALADAIGRTLWPTSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILEFALRSSIDPLTDLHLAARIV ELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFGTMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAE NIVEIFADLPGDHPFFQQLTFMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMRKQGVYERVLAVGLDFNLGAG GKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQEEIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQ GLITADGSYETLAEENGTFKDMVAT
Specific function: May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation [H]
COG id: COG1132
COG function: function code V; ABC-type multidrug transport system, ATPase and permease components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR001140 - InterPro: IPR011527 - InterPro: IPR003593 [H]
Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 102297; Mature: 102297
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHEEE MHLTVDIPYWGTVTLFPGIELNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLL EEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGGFTGDAFVQPALLGGQALSAL HHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKG EEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC SLDVGQLVAVINAYKELPGPLKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSP CCCHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC GTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIAIVGGSGAEALADAIGRTLWP CCHHHHHHHHHEEEEEEECCCCHHHHHHCCCEECCCCEEEEECCCCHHHHHHHHCCCCCC TSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA CCCEEEECCCHHHHCCHHHCCCEEEEEECCCEEEEECCHHHHHHCCCCCCCCCCCCCCCC LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILE HHCHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FALRSSIDPLTDLHLAARIVELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEE TMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAENIVEIFADLPGDHPFFQQLT ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECHHHHCCCCCHHHHHHHHH VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMR HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQGVYERVLAVGLDFNLGAGGKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQE HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHH EIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQGLITADGSYETLAEENGTFK HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCHH DMVAT HHHCC >Mature Secondary Structure MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHEEE MHLTVDIPYWGTVTLFPGIELNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLL EEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGGFTGDAFVQPALLGGQALSAL HHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKG EEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC SLDVGQLVAVINAYKELPGPLKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSP CCCHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC GTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIAIVGGSGAEALADAIGRTLWP CCHHHHHHHHHEEEEEEECCCCHHHHHHCCCEECCCCEEEEECCCCHHHHHHHHCCCCCC TSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA CCCEEEECCCHHHHCCHHHCCCEEEEEECCCEEEEECCHHHHHHCCCCCCCCCCCCCCCC LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILE HHCHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FALRSSIDPLTDLHLAARIVELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEE TMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAENIVEIFADLPGDHPFFQQLT ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECHHHHCCCCCHHHHHHHHH VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMR HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQGVYERVLAVGLDFNLGAGGKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQE HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHH EIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQGLITADGSYETLAEENGTFK HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCHH DMVAT HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9202460; 9384377 [H]