Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889832
Identifier: 15889832
GI number: 15889832
Start: 2545452
End: 2547908
Strand: Direct
Name: 15889832
Synonym: Atu2575
Alternate gene names: NA
Gene position: 2545452-2547908 (Clockwise)
Preceding gene: 159185273
Following gene: 15889834
Centisome position: 89.58
GC content: 60.97
Gene sequence:
>2457_bases GTGAGGACCTATCTTCCCGGCGAAAGCGAAGAAGTGTTGAGTGAAGGCTGGACGCTGACACTAACGCCCGCCGATGCCTG CGAGACCCCGTCCGATATTCCGGCATCGCTCGAAAGCCTTCATGTCTCCGTTCCCGGCACCGTGGGGCAAGCGTTGGAAG CGGCCGGGAAATTCGATCGCCTTGCCCCCGTCGCCCTAAATGACAGGGACGCCTGGTATCGGCTGACGATGATCTCAGAC GCCCGGGAACGGGCCATCCTGCGCTTCGATGGTCTTTCCACCATTGCCGAGATCTTCTTCAACGGTGAGCTGATTGCCGC GAGCCAAAGCATGTTCGAAAGGCTGGAAGTGCCGGTCCAGATGACGGGCGCAGACGAGCTTTCGATCTGCTTCCGGGCGC TGGCACCCCGGCTTGAAAAACCCGGTCCCCGCGCTCGCTGGCGGCCGCAGATGATGAATACGCAGGGGCTGCGGCTGATC CGTACCACGGCGCTTGGCTATATGCCCGGCTGGTGCCCGGAAATCCATTCCGCAGGCCCGTGGCGACCTATCAGCCTCAT CAAACAGGACGGCGTGCTGTGCACCCTACGGTCTTCGCTTGACGATACCGGCACGGGAAAGGTCAGCATCGTTCTTCAAG CGAACCGCGATATACAGTCCGCACGGCTGATTTGTGCTGGTTACAGCATCAATCTTTCGAAGGCTGAAGACGGCAAACTC CTCGGCGAACTCATCATTCCCGGCGTCGAAATCTGGTGGCCGCACACTCATGGCAGGCCCGCGCTGCACGAGGTCGTTCT GGAGTTGGACGGCAACCAACACAGGCTCGGACGCACCGGCTTCCGCCAGGTGGAGATCGATCACGGCGAAGACGGCAATG GTTTCGGCCTCAAGGTAAACGGTCAGCCGGTCTTCTGCCGCGGTGCGGTCTGGACGACGGCCGATATTGTGCGCCTGCCG GGAACACGGCCGGACTACGAGCCATGGCTAAAAAAAGCCGCCGAAGCCGGTATGAACATGATCCGCGTGGGCGGCACCAT GGCCTATGAGACGCCGGAATTCTTCGCGCTTTGCGACGAACTTGGCATCATGGTCTGGCAGGATGCCATGCTTGCCAATT TCGATTACCCGGCGAAGGACGATGGCCTTCGTCAGCATATCGTTATGGAAATCGAGCAACTCCTCGAATCGACGGCACTT TCTCCATCGTTTGCCATTTTCTGCGGCGGCAGTGAAATGTACCAGCAGGGCGCGATGCTCGGCTTGCCGGAACAGATATG GAAGGGCACACTGACCGAAGAAATCCTGCCGGAACTGGTCGCCGAAAAGCGGCCGGATGCGGCCTATGTTGCCAATTCCC CTTCCGGCGGCGCTTTGCCCTTCTTCCCCAATGCCGGCGTGGGCCACTATTACGGCGTTGGTGCCTATTGCCGGCCATTG GAAGATGCCCGCCGCGCCGATCTGCGTTTCGCCGCCGAATGTCTCGCCTTCGCCAATATTCCGGAACAGGAGACGCTGGA CAGATATCTTCCCGGCGTGGCCGTTCACGATCCGCGCTGGAAAGCGCGAACACCGCGTGACCGCGGCGCTTCCTGGGATT TCGAGGATGTCCGCGATCATTATCTGAAGCTGCTTTACGAGGCGGAACCGGATGTGCTGCGGCGGGAAGACGGCGCCCTT TATCTCGACATGTCGCGCGCCGCGACGGCCGAGGTGATGGAGGCGACGTTCGCCGAATGGCGGCGCAGCGGCTCTTCCTG TCAGGGCGCTTTGGTCTGGACGCTGCAGGATCTTGTTCCAGGTGCAGGCTGGGGTATCATCGACGCCGCCGGCCGGCCCA AATCCGTCTGGCATGCGCTGAAAAGAGCGTTCCGCCCCGTTCAGGTCAGCCTTTCCGACGAAGGTACCAACGGGCTCGAC ATTCACATCCTCAACGATACCGGCGACAGCCTGAATACCATGCTGGAGCTGACCTGCCTGCGCGAAGGTTTACAGCCCGT CGTTCATGCCAAACGGCCCCTCGCACTGTTGCCGCGAGAGAGCCAGACGATTGCCGCAACCGACCTGTTCGGCGCTTTTT TCGATACGACCTATGCCTACCGCTTCGGCCCGCCATCCCACGATGTGACAATCGCTCGCCTTCGGGATATTGCAACCGGG CATGTCATCGCCGACGCCTTCCATTTTCCGCTCGGCCGGAAAAAGGCGCTGCATGCCGCAAACCTTCAGGTCGCAATCAG CGAAACAAACGGCCACTGGTCCCTCGAAATCGGCACGGACCGGCTGGCGCAATCTGTCCATATCACGGCAGAGGGCTACC GCGCCTGCGAAAGCTGGTTCCATCTCGGCCCTGGCGAGGCCAGAAAAATCGGCCTTTTACCGGAGACCGCCACAACCGAA GCCCCTCCCTCCGGAGAGGTCGTGTCACTGGGCTCCAGCCGGCGGTTTTCGTTCTAG
Upstream 100 bases:
>100_bases AGTTCGATGCGCTGGCCACCGTGCTCGATCCGGCCGCCGATGCATGGGATGGTTTAATGGAAAGCCTTGGCGAAAAACTA TCTGATGCCAGCGAGGCGGC
Downstream 100 bases:
>100_bases AGCCAGCCGCTTCACCGTTTCGATATAGATTGTCTTCGCTTCCGGTGTTGAGAGATTGTGATCGGCATCGGGAATGATGG TCAGCGATACGTTGCGATAG
Product: mannosidase
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Glycoside Hydrolase Family 2 Protein; Glycosidase; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; O-Glycosyl Hydrolase; Family 2 Glycosyl Hydrolase; Beta-Mannosidase Man2A; Beta-Galactosidase/Beta; Glycosyl Hydrolase; Beta-Mannosidase-Related Protein; BETA-Mannosidase Protein; Glycoside Hydrolase Family 2 TIM Barrel
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDRLAPVALNDRDAWYRLTMISD ARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQMTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLI RTTALGYMPGWCPEIHSAGPWRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKL LGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVNGQPVFCRGAVWTTADIVRLP GTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDELGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTAL SPSFAIFCGGSEMYQQGAMLGLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPL EDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDHYLKLLYEAEPDVLRREDGAL YLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVPGAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLD IHILNDTGDSLNTMLELTCLREGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATG HVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWFHLGPGEARKIGLLPETATTE APPSGEVVSLGSSRRFSF
Sequences:
>Translated_818_residues MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDRLAPVALNDRDAWYRLTMISD ARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQMTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLI RTTALGYMPGWCPEIHSAGPWRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKL LGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVNGQPVFCRGAVWTTADIVRLP GTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDELGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTAL SPSFAIFCGGSEMYQQGAMLGLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPL EDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDHYLKLLYEAEPDVLRREDGAL YLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVPGAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLD IHILNDTGDSLNTMLELTCLREGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATG HVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWFHLGPGEARKIGLLPETATTE APPSGEVVSLGSSRRFSF >Mature_818_residues MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDRLAPVALNDRDAWYRLTMISD ARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQMTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLI RTTALGYMPGWCPEIHSAGPWRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKL LGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVNGQPVFCRGAVWTTADIVRLP GTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDELGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTAL SPSFAIFCGGSEMYQQGAMLGLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPL EDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDHYLKLLYEAEPDVLRREDGAL YLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVPGAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLD IHILNDTGDSLNTMLELTCLREGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATG HVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWFHLGPGEARKIGLLPETATTE APPSGEVVSLGSSRRFSF
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=705, Percent_Identity=25.3900709219858, Blast_Score=153, Evalue=7e-37, Organism=Caenorhabditis elegans, GI17550784, Length=742, Percent_Identity=22.3719676549865, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24643838, Length=733, Percent_Identity=23.8744884038199, Blast_Score=112, Evalue=1e-24, Organism=Drosophila melanogaster, GI24643840, Length=526, Percent_Identity=25.6653992395437, Blast_Score=99, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90068; Mature: 90068
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDR CCCCCCCCHHHHHHCCCEEEECCCHHCCCCCCCCCCHHHEEEECCCHHHHHHHHHCCCCC LAPVALNDRDAWYRLTMISDARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQ CCCEEECCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEHHHHHHHHHCCCEE MTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLIRTTALGYMPGWCPEIHSAGP ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCC WRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKL CCHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEECEEECCCCCCCHH LGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVN HHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEC GQPVFCRGAVWTTADIVRLPGTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDE CCEEEEECCEECCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEEECCCHHHHHHHH LGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTALSPSFAIFCGGSEMYQQGAML HCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCC GLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPL CCCHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCH EDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDH HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH YLKLLYEAEPDVLRREDGALYLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVP HHHHHHCCCCCHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCC GAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLDIHILNDTGDSLNTMLELTCL CCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHH REGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATG HHHHHHHHHCCCCEEECCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHCC HVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWF HHHHHHHHCCCCCCHHEEECCEEEEEEECCCEEEEEECHHHHHCEEEEEHHHHHHHHHHH HLGPGEARKIGLLPETATTEAPPSGEVVSLGSSRRFSF CCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCC >Mature Secondary Structure MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDR CCCCCCCCHHHHHHCCCEEEECCCHHCCCCCCCCCCHHHEEEECCCHHHHHHHHHCCCCC LAPVALNDRDAWYRLTMISDARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQ CCCEEECCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEHHHHHHHHHCCCEE MTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLIRTTALGYMPGWCPEIHSAGP ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCC WRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKL CCHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEECEEECCCCCCCHH LGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVN HHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEC GQPVFCRGAVWTTADIVRLPGTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDE CCEEEEECCEECCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEEECCCHHHHHHHH LGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTALSPSFAIFCGGSEMYQQGAML HCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCC GLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPL CCCHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCH EDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDH HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH YLKLLYEAEPDVLRREDGALYLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVP HHHHHHCCCCCHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCC GAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLDIHILNDTGDSLNTMLELTCL CCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHH REGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATG HHHHHHHHHCCCCEEECCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHCC HVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWF HHHHHHHHCCCCCCHHEEECCEEEEEEECCCEEEEEECHHHHHCEEEEEHHHHHHHHHHH HLGPGEARKIGLLPETATTEAPPSGEVVSLGSSRRFSF CCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA