Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 15888729

GI number: 15888729

Start: 1397339

End: 1398256

Strand: Reverse

Name: ycjO [C]

Synonym: Atu1403

Alternate gene names: 15888729

Gene position: 1398256-1397339 (Counterclockwise)

Preceding gene: 15888730

Following gene: 15888728

Centisome position: 49.21

GC content: 58.71

Gene sequence:

>918_bases
ATGAAACGTGCCCAGCTCGCAGGAGCAAGGCTCGACGGTCATCCGTTGACTCCTTATCTCTTCGCCGCACCGGTCGGCAT
CTATCTTCTGCTGTTTCAGTTTTATCCGCTGGTCCAGCAGTTCTTCATGAGCTTCACCGCCACCGACCTGCTGACGCCTA
ACGTCAACCCGTTCGTCGGTATCGAGAATTATTCCTTCCTGATCGAGGACGGTGAACTGTGGAAGGTGCTGTGGATCACG
GCGATCTATACCGTCGCCTGCGTGATCTTTGCGATCGGCACGGGCCTAGGTTCGGCCATGCTGCTCGATTCCCCCTTTTT
CGGCCGGGGTATTGCCCGGGCGCTGATCACCGTTCCCTGGGCCGCACCGTCAGTTGCCGTCGCGCTGGTATTCACCTGGA
TATTCAATTCGCAATACGGCATTTTCAATCGGGTTCTCACCGGTCTCGGCCTTCCCTTCGGCGGTGAGAACTGGCTCGAC
GATCCAAACCTCGCCCTACCGGCTATCCTGCTCACCACCGTCTGGCAGATATTCCCCTTTTCTTCCGTTGTGATCCTCGC
GGCTTTGCAGGGCGTGCCGCATGAGCTCAAGGAGGCTGCCGTCATCGATGGTGCGGACCGGCTCAACATCTTCAAGACCG
CCACATGGCCGACCATCCAGCCGACCGTGCTGATGCTGACGTTGTTCGTCACCATCTGGTCGCTGCGCCGCTTCGACCTC
ATCTGGCTGATGACGCAGGGCGGTCCCATCGGCGCGACCAACACGCTCGTCATCGAGCTTTATCGCCAGGGTTTCGTCTA
TCGCGATCTCGGATCAGCGGCCTCCATCGGCATGATCGGCCTGTCGATCGCGCTTCTGGTAACCGTCATCTATTTCAAGG
TCACCCGGATGACTGAACAGGCACAGGGGAAGCGTTGA

Upstream 100 bases:

>100_bases
GCCCAGTCGCTGGTGGAGCGACGCGTCCTTCGCTGAGATCGATGCGGAGGCTGTCTGATCGGCCTCCGCAACCCCGGCTC
TATTTCCATCGAGGTCAGTT

Downstream 100 bases:

>100_bases
TGAATACCACCGGCAACGCCCACTTTGTTCGCATCCTCGCCGTCCTCTTCATGCTCGGCTTTGCGGCTTTTCCGATCTAC
TGGATGTTCGTCACGTCCAT

Product: ABC transporter, membrane spanning protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKRAQLAGARLDGHPLTPYLFAAPVGIYLLLFQFYPLVQQFFMSFTATDLLTPNVNPFVGIENYSFLIEDGELWKVLWIT
AIYTVACVIFAIGTGLGSAMLLDSPFFGRGIARALITVPWAAPSVAVALVFTWIFNSQYGIFNRVLTGLGLPFGGENWLD
DPNLALPAILLTTVWQIFPFSSVVILAALQGVPHELKEAAVIDGADRLNIFKTATWPTIQPTVLMLTLFVTIWSLRRFDL
IWLMTQGGPIGATNTLVIELYRQGFVYRDLGSAASIGMIGLSIALLVTVIYFKVTRMTEQAQGKR

Sequences:

>Translated_305_residues
MKRAQLAGARLDGHPLTPYLFAAPVGIYLLLFQFYPLVQQFFMSFTATDLLTPNVNPFVGIENYSFLIEDGELWKVLWIT
AIYTVACVIFAIGTGLGSAMLLDSPFFGRGIARALITVPWAAPSVAVALVFTWIFNSQYGIFNRVLTGLGLPFGGENWLD
DPNLALPAILLTTVWQIFPFSSVVILAALQGVPHELKEAAVIDGADRLNIFKTATWPTIQPTVLMLTLFVTIWSLRRFDL
IWLMTQGGPIGATNTLVIELYRQGFVYRDLGSAASIGMIGLSIALLVTVIYFKVTRMTEQAQGKR
>Mature_305_residues
MKRAQLAGARLDGHPLTPYLFAAPVGIYLLLFQFYPLVQQFFMSFTATDLLTPNVNPFVGIENYSFLIEDGELWKVLWIT
AIYTVACVIFAIGTGLGSAMLLDSPFFGRGIARALITVPWAAPSVAVALVFTWIFNSQYGIFNRVLTGLGLPFGGENWLD
DPNLALPAILLTTVWQIFPFSSVVILAALQGVPHELKEAAVIDGADRLNIFKTATWPTIQPTVLMLTLFVTIWSLRRFDL
IWLMTQGGPIGATNTLVIELYRQGFVYRDLGSAASIGMIGLSIALLVTVIYFKVTRMTEQAQGKR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=275, Percent_Identity=30.5454545454545, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789861, Length=286, Percent_Identity=26.2237762237762, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790465, Length=282, Percent_Identity=28.3687943262411, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33659; Mature: 33659

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAQLAGARLDGHPLTPYLFAAPVGIYLLLFQFYPLVQQFFMSFTATDLLTPNVNPFVG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IENYSFLIEDGELWKVLWITAIYTVACVIFAIGTGLGSAMLLDSPFFGRGIARALITVPW
ECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCC
AAPSVAVALVFTWIFNSQYGIFNRVLTGLGLPFGGENWLDDPNLALPAILLTTVWQIFPF
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCH
SSVVILAALQGVPHELKEAAVIDGADRLNIFKTATWPTIQPTVLMLTLFVTIWSLRRFDL
HHHHHHHHHHCCCHHHHHHHHCCCCHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEE
IWLMTQGGPIGATNTLVIELYRQGFVYRDLGSAASIGMIGLSIALLVTVIYFKVTRMTEQ
EEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQGKR
HCCCC
>Mature Secondary Structure
MKRAQLAGARLDGHPLTPYLFAAPVGIYLLLFQFYPLVQQFFMSFTATDLLTPNVNPFVG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IENYSFLIEDGELWKVLWITAIYTVACVIFAIGTGLGSAMLLDSPFFGRGIARALITVPW
ECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCC
AAPSVAVALVFTWIFNSQYGIFNRVLTGLGLPFGGENWLDDPNLALPAILLTTVWQIFPF
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCH
SSVVILAALQGVPHELKEAAVIDGADRLNIFKTATWPTIQPTVLMLTLFVTIWSLRRFDL
HHHHHHHHHHCCCHHHHHHHHCCCCHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEE
IWLMTQGGPIGATNTLVIELYRQGFVYRDLGSAASIGMIGLSIALLVTVIYFKVTRMTEQ
EEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQGKR
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA