Definition Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence.
Accession NC_003062
Length 2,841,580

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The map label for this gene is 15888730

Identifier: 15888730

GI number: 15888730

Start: 1398321

End: 1399538

Strand: Reverse

Name: 15888730

Synonym: Atu1404

Alternate gene names: NA

Gene position: 1399538-1398321 (Counterclockwise)

Preceding gene: 159184746

Following gene: 15888729

Centisome position: 49.25

GC content: 60.18

Gene sequence:

>1218_bases
ATGAGCAATATCGTAAAATCCTTGATTGCGGCCACGATGGCGACGGCGCTTGCATCCTGGGCAGCGCCGGCGCTGGCCAA
GGACAAGATCACCTTCGCCGCCGCGGTTTTTGCGGAAGCCGGACGTGGCGACCGGGTCAAGGCGTGGATCCAGAAATTCA
ACGAAAGTCAGGACAAGGTCGAAGTTGAACCCATCGCAATTCCGTTTTCCAGCCTAGCCAACACGGTCTTCACCCAGATG
GGTGGCGGCGGCGGACCGGACCTCGTGCGCTTCGACCAGACCGATTTCTTCGCTGCCATTCCATCCGGTCGCCTGCTGCC
GCTCGATGATATGATCAGCGACAAGGATCACGAATTCCTGGGGCCGGACCGCTTCATGAAGGTGAAGGACGTCCGTTACG
GTCTGCTGTTCGACACGACGGGTTATGCGCTGCTGTACAACAAGGACATCCTGCCGGAACCGCCGAAGGATTTCGAAAGC
TTCCTGGCGGCCGCCAAGGAGAAAACCAAGGACGGCGTGTATGGTTATGCCTACCGCGCCACAATGGCGGAGCGCGCCGG
TTTCTGGCAGGATCTCTGCAACTACGTCTTCGGATTTGGCGGTCGCTGGAGCGACAAGGACGGCAAGCTCACGCTCAACA
GCCCTGACGTCATCAAGGGCGTCACCGCCTACAAGCAGGTTTATGATGCCGCCGTGACGCCACGCGGCGCGGATGCGGCC
ACCTATCGCCGCATGTTCTGGGAAGGCAAGATCGCCATGAACGTCGATAATGGCGGCGTGGCGGCAATCTTCAACCAGAA
CGCCCCGCAGCTCAATTTCGCCGCAGCACCCTCGCCTTTCCCGGACAAGGCGCAGGGCCTCATCATGACCGCTCTCGTGG
TCAACGCCAACACGAAGCACAAGGATGCTGCGGGCGCCTTCATCAAATGGGCCTATTCCCCCGAGAACCAGAAAGGCCTT
CAGGCCGCAATGGGGACGGGTGTCGGCACCAAGATCGACATGTCTGCCGAAGAGCAGGCGAAGCGGCCATGGCTGAAGGT
CTATGAGGGCCAGATGCAGAACGCCCTTCCGCAGCTTGTGATGGGACATGAGGGCAAGACGCCCGAAATCCAGCAGATCG
TGCTCGAGCAGGTGTTGAAGGTGCTTCTCGAAAATGCCGATCCAAAGGACGCCATGGATCGCGCCCAGTCGCTGGTGGAG
CGACGCGTCCTTCGCTGA

Upstream 100 bases:

>100_bases
GACATCCGTCCGCAACGAAGAAAGATTTCTGAAATACATATTTTGCAATGACTTATGGCGCTCGGGAGGCGCCAATAAAA
AAGCTCAGGGAGGAGCATGG

Downstream 100 bases:

>100_bases
GATCGATGCGGAGGCTGTCTGATCGGCCTCCGCAACCCCGGCTCTATTTCCATCGAGGTCAGTTATGAAACGTGCCCAGC
TCGCAGGAGCAAGGCTCGAC

Product: ABC transporter, substrate binding protein (sugar)

Products: NA

Alternate protein names: Sugar Transport System; Sugar ABC Transporter; Glycerol-3-Phosphate ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSNIVKSLIAATMATALASWAAPALAKDKITFAAAVFAEAGRGDRVKAWIQKFNESQDKVEVEPIAIPFSSLANTVFTQM
GGGGGPDLVRFDQTDFFAAIPSGRLLPLDDMISDKDHEFLGPDRFMKVKDVRYGLLFDTTGYALLYNKDILPEPPKDFES
FLAAAKEKTKDGVYGYAYRATMAERAGFWQDLCNYVFGFGGRWSDKDGKLTLNSPDVIKGVTAYKQVYDAAVTPRGADAA
TYRRMFWEGKIAMNVDNGGVAAIFNQNAPQLNFAAAPSPFPDKAQGLIMTALVVNANTKHKDAAGAFIKWAYSPENQKGL
QAAMGTGVGTKIDMSAEEQAKRPWLKVYEGQMQNALPQLVMGHEGKTPEIQQIVLEQVLKVLLENADPKDAMDRAQSLVE
RRVLR

Sequences:

>Translated_405_residues
MSNIVKSLIAATMATALASWAAPALAKDKITFAAAVFAEAGRGDRVKAWIQKFNESQDKVEVEPIAIPFSSLANTVFTQM
GGGGGPDLVRFDQTDFFAAIPSGRLLPLDDMISDKDHEFLGPDRFMKVKDVRYGLLFDTTGYALLYNKDILPEPPKDFES
FLAAAKEKTKDGVYGYAYRATMAERAGFWQDLCNYVFGFGGRWSDKDGKLTLNSPDVIKGVTAYKQVYDAAVTPRGADAA
TYRRMFWEGKIAMNVDNGGVAAIFNQNAPQLNFAAAPSPFPDKAQGLIMTALVVNANTKHKDAAGAFIKWAYSPENQKGL
QAAMGTGVGTKIDMSAEEQAKRPWLKVYEGQMQNALPQLVMGHEGKTPEIQQIVLEQVLKVLLENADPKDAMDRAQSLVE
RRVLR
>Mature_404_residues
SNIVKSLIAATMATALASWAAPALAKDKITFAAAVFAEAGRGDRVKAWIQKFNESQDKVEVEPIAIPFSSLANTVFTQMG
GGGGPDLVRFDQTDFFAAIPSGRLLPLDDMISDKDHEFLGPDRFMKVKDVRYGLLFDTTGYALLYNKDILPEPPKDFESF
LAAAKEKTKDGVYGYAYRATMAERAGFWQDLCNYVFGFGGRWSDKDGKLTLNSPDVIKGVTAYKQVYDAAVTPRGADAAT
YRRMFWEGKIAMNVDNGGVAAIFNQNAPQLNFAAAPSPFPDKAQGLIMTALVVNANTKHKDAAGAFIKWAYSPENQKGLQ
AAMGTGVGTKIDMSAEEQAKRPWLKVYEGQMQNALPQLVMGHEGKTPEIQQIVLEQVLKVLLENADPKDAMDRAQSLVER
RVLR

Specific function: Unknown

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44383; Mature: 44252

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIVKSLIAATMATALASWAAPALAKDKITFAAAVFAEAGRGDRVKAWIQKFNESQDKV
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCE
EVEPIAIPFSSLANTVFTQMGGGGGPDLVRFDQTDFFAAIPSGRLLPLDDMISDKDHEFL
EEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECCCCCEECHHHHHCCCCCCCC
GPDRFMKVKDVRYGLLFDTTGYALLYNKDILPEPPKDFESFLAAAKEKTKDGVYGYAYRA
CHHHHEEHHHCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHH
TMAERAGFWQDLCNYVFGFGGRWSDKDGKLTLNSPDVIKGVTAYKQVYDAAVTPRGADAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHH
TYRRMFWEGKIAMNVDNGGVAAIFNQNAPQLNFAAAPSPFPDKAQGLIMTALVVNANTKH
HHHHHHCCCEEEEEECCCCEEEEECCCCCCEEECCCCCCCCCHHCCCEEEEEEECCCCCC
KDAAGAFIKWAYSPENQKGLQAAMGTGVGTKIDMSAEEQAKRPWLKVYEGQMQNALPQLV
CCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHH
MGHEGKTPEIQQIVLEQVLKVLLENADPKDAMDRAQSLVERRVLR
HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNIVKSLIAATMATALASWAAPALAKDKITFAAAVFAEAGRGDRVKAWIQKFNESQDKV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCE
EVEPIAIPFSSLANTVFTQMGGGGGPDLVRFDQTDFFAAIPSGRLLPLDDMISDKDHEFL
EEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECCCCCEECHHHHHCCCCCCCC
GPDRFMKVKDVRYGLLFDTTGYALLYNKDILPEPPKDFESFLAAAKEKTKDGVYGYAYRA
CHHHHEEHHHCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHH
TMAERAGFWQDLCNYVFGFGGRWSDKDGKLTLNSPDVIKGVTAYKQVYDAAVTPRGADAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHH
TYRRMFWEGKIAMNVDNGGVAAIFNQNAPQLNFAAAPSPFPDKAQGLIMTALVVNANTKH
HHHHHHCCCEEEEEECCCCEEEEECCCCCCEEECCCCCCCCCHHCCCEEEEEEECCCCCC
KDAAGAFIKWAYSPENQKGLQAAMGTGVGTKIDMSAEEQAKRPWLKVYEGQMQNALPQLV
CCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHH
MGHEGKTPEIQQIVLEQVLKVLLENADPKDAMDRAQSLVERRVLR
HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA