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The map label for this gene is yecS [H]

Identifier: 15888715

GI number: 15888715

Start: 1383069

End: 1383740

Strand: Direct

Name: yecS [H]

Synonym: Atu1389

Alternate gene names: 15888715

Gene position: 1383069-1383740 (Clockwise)

Preceding gene: 15888714

Following gene: 15888716

Centisome position: 48.67

GC content: 57.89

Gene sequence:

>672_bases
GTGAAATACACATTCGATTTTGGATGGCTTCTCGAATATTACCCGCAGATCGCCAAGGGCATTGCCATCACGCTGGAATT
GATTGCCATTGGCGGCGTTCTTGGCATCGCGCTCGGCATATTCTGCGCCTGGGTGCGCGCGCTCGGGCCCAAATGGCTGC
GGCCGCCGGTTGCGACCTATGTGGAGCTCATTCGCAATACGCCATTTCTCATACAACTGTTTTTTATCTTCTTCGGCCTG
CCGTCGCTTGGCCTGCAACTGTCGGAACTGAGCGCGGCCAACATTGCCATGGTGGTCAATCTCGGTGCTTATAGCTGCGA
AATCATTCGCGCCGGCATTCAGGCGACGCCCAAGGGGCAGTTTGAGGCGGGAGCAAGCCTTGCCATGACCCGTTTCGAAA
CCTTCCGGCATGTGGTGCTGGTGCCGTCCCTGCAACGCATCTGGCCGGCGCTGTCGTCGCAGGTGGTGATCGTCATGCTC
GGCTCGTCCGTTGTGTCGCAGATCGCTGCCGAAGACCTGACCTTTGCCGCCAATTTCATCCAGTCGCGCACCTTCCGCGC
CTTCGAAGCCTACATGGTCTCCACCGTCATCTATCTTGTGCTGGCCATTCTCTTGAGGCAGTTGCTGGTCATGGGCGGCA
ACCTCATTTTTCCGCGCAGGAGTGTCCGATGA

Upstream 100 bases:

>100_bases
ATCTTCCGAAGGATCTCTGACCAACCTGGCAAATCCATGCGCTGGCCGTGTCTGATCCCGGCCCGGCGCGTGGTTTGTCC
TCCCCGAAAGGAAATATCGG

Downstream 100 bases:

>100_bases
TCGAATTCTCCACCTGGGATATTCTCAGAAACCTGTTGCTCGCCACGCGCTGGACCGTTCTGCTGTCGCTCGTTTCCTTT
GCCGGCGGCGGTCTCGTGGC

Product: ABC transporter, membrane spanning protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATYVELIRNTPFLIQLFFIFFGL
PSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQFEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVML
GSSVVSQIAAEDLTFAANFIQSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRRSVR

Sequences:

>Translated_223_residues
MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATYVELIRNTPFLIQLFFIFFGL
PSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQFEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVML
GSSVVSQIAAEDLTFAANFIQSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRRSVR
>Mature_223_residues
MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATYVELIRNTPFLIQLFFIFFGL
PSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQFEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVML
GSSVVSQIAAEDLTFAANFIQSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRRSVR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=201, Percent_Identity=34.8258706467662, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=32.2115384615385, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788645, Length=199, Percent_Identity=27.6381909547739, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787087, Length=226, Percent_Identity=27.4336283185841, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787086, Length=225, Percent_Identity=27.1111111111111, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=26.8867924528302, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786874, Length=202, Percent_Identity=25.2475247524752, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994930, Length=124, Percent_Identity=33.8709677419355, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788646, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24653; Mature: 24653

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ
HHHHHCCHHHHHHHHHHHCCHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC
FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHH
QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRRSVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure
MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ
HHHHHCCHHHHHHHHHHHCCHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC
FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHH
QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRRSVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]