Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887808
Identifier: 15887808
GI number: 15887808
Start: 450196
End: 452397
Strand: Direct
Name: 15887808
Synonym: Atu8127
Alternate gene names: NA
Gene position: 450196-452397 (Clockwise)
Preceding gene: 15887807
Following gene: 159184312
Centisome position: 15.84
GC content: 58.17
Gene sequence:
>2202_bases ATGCAGCGCACTTCCTTTGCAGAAGCTGAAATCGCCGATCATGCAGATTTCGAAGCCATCGGCTTGCAGGCGCAGGCCGC AACAGATGGTCTTTGGCTGGATGCCATCGGCTATCCTGCCCATTGGGCCGCATTTACCGTCGCGCGTAAATCGGCGCAGG AAATCACGGTTTCGGCTGGCCGTTATGTCGCCGGGGAAATCGTCTTTGCGCAGGAAGCCCCCACCGATATGAACCTTCAG CTTCATATCCCGTTGGCTGCTTCCGACCAGCGTTGGGTTGCGGTCCTGCTTCGCGGCAAGGAAGTGACGGACACGGCAAA CCGGCCTTTTGAAACTTCCGATGATCCCGAAACCAGCGTTATCGTGAACCGCACCACGCCGAAGACAATCCGCCGGGTCG TTGAACTCATCGTGCAGCCGGGCGATGCAAACCCGGTCCCGGTCAAGCCGGTAGTTGCCTCCACCGATGCATGTATTGCC TTCGTACTGCTGACCTCTTCGGGCATTGACGCTATCGAGCCGGGCAACAGCGACCGTGTAAAAACCCTCTATGAAGTGGA GGGCCGCGTAACGGCGCTGGAAGTCGATCTGGACGCGCTCTTTATGCGGACCGAGACGATTGAAACGCAGATCGTCAACA TCAAGGCCAAGCTGACGGAAATCCCGCGTCCGGTCATTATTCGCCAGATGCAGCGCGACATTGGTGCGGCTCGCCTGAAA GTCGATCTGCCGGACGAGGCACGCGCCTACGTGTTCGATAATGGCTTGATCCCTGACCGTTGGGACATGACGCATGTTGA CTGGCTTGCCCGTATTGAAGAGGGTATTCGCTTTGGCTTTGCCGCCGAAGCGCAGGCCCGGCTTGAAGTCCAGGCGGAAG ATGATCCGAAGATTTATTTTCGTGGTCGGCGCATGGTGCCAGCCTTTGACGAAGTGACCCGCATCGCGAATACCTCTTTG GATTCGACGCTGCTGATTTCGCAGTTGGTGCATACCGAGATTACCGCCATCCGCAAGGAAGCCTCTCGCGTTCGCGTCAC GTATGGTCCGACGCAATGGGCTTGCGAAAATCAGGCTGGCTGGTCGGCTCTCGGCGGCGATGCGCGTGTCGGACAGATAT TCAACATCGGCGGCGAGGAATTCCAGATTGTCGATATCCGCGCCAACGGCGGTCCCGGCCATCAAACCTATGGCGTCCGG CAAATCCGATATGAGTCCTATAACGAGGTCTATTGGGAGTACGTCACCGAACAAATCGGCCTAAACGGCTCGATTTATGG ACAGACCTTCCTCGTTGCCCAGCCCATGCAGGCGACCAGCCTTGAACTGTCATTTGCCCGTGTCGGCAATGACGGTGATG TGCACGTCCTGATCGTGGAAACCACGACAGGCGGCGTTCCGCGTTTTGATGCGGTGCTGGCAAAAGGCATCCTGAAACAC GCCGATATCAAGGTCGGCTGGAATAAGGTTGAACTGCCGATCACGCTGCTGGAAAGCGGGAAGCGCTATGCGTTTGTGAC CGTGACGACCGGTGCGCATGCGCTGCATATCTCGGCTTCGAACAAGTACACGGGCGGAACGCAGTTTCTCACGACAGACG GCGCATTTGCGCAAGGGTCGATGGAAACCGATATTTGCTTCAAGCTGAATGCGGCACGCTATCGCAGTCCGCGCACGGTT ATTCCGATGCAGGCGCTGAACCTCGCGGATGGCATGACACAAATTGACATGCTGTTTGCCGGTTGGGTGCCGGGTGGTTG CCAGCTTGGATGGGAAATCCGCCCTTCCGGCTCGGCTATCTGGACAGAACTGGACGATGGCGACCCGGCGACAAATCCGC TTGTCGGGCTTCCGGCCTCGGTGGAATTGCGCATGGTCATGATGGGCACGGCTGATTTGCAGCCGATGATCCAGCTCGAC GACAAGGCGATTTCGCGCGTGGCCCGTAATCGCAGCACGATGCGGGCAGTCAGCAAGAGCTTGCCGTTCGGTTTTCCCAC CACGCATGTCCAGACGCAATACACGCTGGATAGCTTCGATCCGGTGCGACACACCTTCACCCCCGCCATCATGGTGGGCG ACACGGTTGTAAGCCCTGATGCGACGGTCGTTACTGTCGATCCGCAAGTGCCGTCGCGCCGGACATATCTTTCAACCTAC ACGCTCGGCGCTGCGGCCAGCGCAGCGGCATCACGTTCGTAA
Upstream 100 bases:
>100_bases GCGGCGCGGCATCACCTTTAACGACAACATTTTCATCGACGGAAGCCATGCCATCGGCGGTTACATGGATCGCAAGCGGC TGGATTGAGGGTAACGACAC
Downstream 100 bases:
>100_bases ACGGAACTGCGCCCGACGCCGACCCCGCCGCGTTTCCGCTGAATTATCCTACCATCGTTCGGTCATTGCCGCAGGCGGCG GCGCTCGGCGCGGCTGGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 733; Mature: 733
Protein sequence:
>733_residues MQRTSFAEAEIADHADFEAIGLQAQAATDGLWLDAIGYPAHWAAFTVARKSAQEITVSAGRYVAGEIVFAQEAPTDMNLQ LHIPLAASDQRWVAVLLRGKEVTDTANRPFETSDDPETSVIVNRTTPKTIRRVVELIVQPGDANPVPVKPVVASTDACIA FVLLTSSGIDAIEPGNSDRVKTLYEVEGRVTALEVDLDALFMRTETIETQIVNIKAKLTEIPRPVIIRQMQRDIGAARLK VDLPDEARAYVFDNGLIPDRWDMTHVDWLARIEEGIRFGFAAEAQARLEVQAEDDPKIYFRGRRMVPAFDEVTRIANTSL DSTLLISQLVHTEITAIRKEASRVRVTYGPTQWACENQAGWSALGGDARVGQIFNIGGEEFQIVDIRANGGPGHQTYGVR QIRYESYNEVYWEYVTEQIGLNGSIYGQTFLVAQPMQATSLELSFARVGNDGDVHVLIVETTTGGVPRFDAVLAKGILKH ADIKVGWNKVELPITLLESGKRYAFVTVTTGAHALHISASNKYTGGTQFLTTDGAFAQGSMETDICFKLNAARYRSPRTV IPMQALNLADGMTQIDMLFAGWVPGGCQLGWEIRPSGSAIWTELDDGDPATNPLVGLPASVELRMVMMGTADLQPMIQLD DKAISRVARNRSTMRAVSKSLPFGFPTTHVQTQYTLDSFDPVRHTFTPAIMVGDTVVSPDATVVTVDPQVPSRRTYLSTY TLGAAASAAASRS
Sequences:
>Translated_733_residues MQRTSFAEAEIADHADFEAIGLQAQAATDGLWLDAIGYPAHWAAFTVARKSAQEITVSAGRYVAGEIVFAQEAPTDMNLQ LHIPLAASDQRWVAVLLRGKEVTDTANRPFETSDDPETSVIVNRTTPKTIRRVVELIVQPGDANPVPVKPVVASTDACIA FVLLTSSGIDAIEPGNSDRVKTLYEVEGRVTALEVDLDALFMRTETIETQIVNIKAKLTEIPRPVIIRQMQRDIGAARLK VDLPDEARAYVFDNGLIPDRWDMTHVDWLARIEEGIRFGFAAEAQARLEVQAEDDPKIYFRGRRMVPAFDEVTRIANTSL DSTLLISQLVHTEITAIRKEASRVRVTYGPTQWACENQAGWSALGGDARVGQIFNIGGEEFQIVDIRANGGPGHQTYGVR QIRYESYNEVYWEYVTEQIGLNGSIYGQTFLVAQPMQATSLELSFARVGNDGDVHVLIVETTTGGVPRFDAVLAKGILKH ADIKVGWNKVELPITLLESGKRYAFVTVTTGAHALHISASNKYTGGTQFLTTDGAFAQGSMETDICFKLNAARYRSPRTV IPMQALNLADGMTQIDMLFAGWVPGGCQLGWEIRPSGSAIWTELDDGDPATNPLVGLPASVELRMVMMGTADLQPMIQLD DKAISRVARNRSTMRAVSKSLPFGFPTTHVQTQYTLDSFDPVRHTFTPAIMVGDTVVSPDATVVTVDPQVPSRRTYLSTY TLGAAASAAASRS >Mature_733_residues MQRTSFAEAEIADHADFEAIGLQAQAATDGLWLDAIGYPAHWAAFTVARKSAQEITVSAGRYVAGEIVFAQEAPTDMNLQ LHIPLAASDQRWVAVLLRGKEVTDTANRPFETSDDPETSVIVNRTTPKTIRRVVELIVQPGDANPVPVKPVVASTDACIA FVLLTSSGIDAIEPGNSDRVKTLYEVEGRVTALEVDLDALFMRTETIETQIVNIKAKLTEIPRPVIIRQMQRDIGAARLK VDLPDEARAYVFDNGLIPDRWDMTHVDWLARIEEGIRFGFAAEAQARLEVQAEDDPKIYFRGRRMVPAFDEVTRIANTSL DSTLLISQLVHTEITAIRKEASRVRVTYGPTQWACENQAGWSALGGDARVGQIFNIGGEEFQIVDIRANGGPGHQTYGVR QIRYESYNEVYWEYVTEQIGLNGSIYGQTFLVAQPMQATSLELSFARVGNDGDVHVLIVETTTGGVPRFDAVLAKGILKH ADIKVGWNKVELPITLLESGKRYAFVTVTTGAHALHISASNKYTGGTQFLTTDGAFAQGSMETDICFKLNAARYRSPRTV IPMQALNLADGMTQIDMLFAGWVPGGCQLGWEIRPSGSAIWTELDDGDPATNPLVGLPASVELRMVMMGTADLQPMIQLD DKAISRVARNRSTMRAVSKSLPFGFPTTHVQTQYTLDSFDPVRHTFTPAIMVGDTVVSPDATVVTVDPQVPSRRTYLSTY TLGAAASAAASRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80192; Mature: 80192
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00381 CLP_PROTEASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRTSFAEAEIADHADFEAIGLQAQAATDGLWLDAIGYPAHWAAFTVARKSAQEITVSAG CCCCCCCCHHHCCCCCCEEECEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECC RYVAGEIVFAQEAPTDMNLQLHIPLAASDQRWVAVLLRGKEVTDTANRPFETSDDPETSV CEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEE IVNRTTPKTIRRVVELIVQPGDANPVPVKPVVASTDACIAFVLLTSSGIDAIEPGNSDRV EEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHEEEEEEECCCCCCCCCCCCCCE KTLYEVEGRVTALEVDLDALFMRTETIETQIVNIKAKLTEIPRPVIIRQMQRDIGAARLK EEEEEECCEEEEEEECHHHEEEEHHEEEEEEEEEEEEHHHCCCHHHHHHHHHCCCCEEEE VDLPDEARAYVFDNGLIPDRWDMTHVDWLARIEEGIRFGFAAEAQARLEVQAEDDPKIYF EECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEECEECCCEEEEEEEECCCCEEEE RGRRMVPAFDEVTRIANTSLDSTLLISQLVHTEITAIRKEASRVRVTYGPTQWACENQAG ECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC WSALGGDARVGQIFNIGGEEFQIVDIRANGGPGHQTYGVRQIRYESYNEVYWEYVTEQIG CCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC LNGSIYGQTFLVAQPMQATSLELSFARVGNDGDVHVLIVETTTGGVPRFDAVLAKGILKH CCCEEECEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH ADIKVGWNKVELPITLLESGKRYAFVTVTTGAHALHISASNKYTGGTQFLTTDGAFAQGS CCEEECCCEEEEEEEEECCCCEEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCEECCC METDICFKLNAARYRSPRTVIPMQALNLADGMTQIDMLFAGWVPGGCQLGWEIRPSGSAI CCCCEEEEECHHHCCCCCEEECHHHHHHHCCCCEEEHEEECCCCCCCEECEEECCCCCEE WTELDDGDPATNPLVGLPASVELRMVMMGTADLQPMIQLDDKAISRVARNRSTMRAVSKS EEEECCCCCCCCCEEECCCCCEEEEEEECCCCCCHHEEECHHHHHHHHHCHHHHHHHHHH LPFGFPTTHVQTQYTLDSFDPVRHTFTPAIMVGDTVVSPDATVVTVDPQVPSRRTYLSTY CCCCCCCCCEEEEEECCCCCCHHHHCCCEEEECCEEECCCCEEEEECCCCCCCCEEEEEE TLGAAASAAASRS ECCCHHHHHCCCC >Mature Secondary Structure MQRTSFAEAEIADHADFEAIGLQAQAATDGLWLDAIGYPAHWAAFTVARKSAQEITVSAG CCCCCCCCHHHCCCCCCEEECEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECC RYVAGEIVFAQEAPTDMNLQLHIPLAASDQRWVAVLLRGKEVTDTANRPFETSDDPETSV CEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEE IVNRTTPKTIRRVVELIVQPGDANPVPVKPVVASTDACIAFVLLTSSGIDAIEPGNSDRV EEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHEEEEEEECCCCCCCCCCCCCCE KTLYEVEGRVTALEVDLDALFMRTETIETQIVNIKAKLTEIPRPVIIRQMQRDIGAARLK EEEEEECCEEEEEEECHHHEEEEHHEEEEEEEEEEEEHHHCCCHHHHHHHHHCCCCEEEE VDLPDEARAYVFDNGLIPDRWDMTHVDWLARIEEGIRFGFAAEAQARLEVQAEDDPKIYF EECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEECEECCCEEEEEEEECCCCEEEE RGRRMVPAFDEVTRIANTSLDSTLLISQLVHTEITAIRKEASRVRVTYGPTQWACENQAG ECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC WSALGGDARVGQIFNIGGEEFQIVDIRANGGPGHQTYGVRQIRYESYNEVYWEYVTEQIG CCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC LNGSIYGQTFLVAQPMQATSLELSFARVGNDGDVHVLIVETTTGGVPRFDAVLAKGILKH CCCEEECEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH ADIKVGWNKVELPITLLESGKRYAFVTVTTGAHALHISASNKYTGGTQFLTTDGAFAQGS CCEEECCCEEEEEEEEECCCCEEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCEECCC METDICFKLNAARYRSPRTVIPMQALNLADGMTQIDMLFAGWVPGGCQLGWEIRPSGSAI CCCCEEEEECHHHCCCCCEEECHHHHHHHCCCCEEEHEEECCCCCCCEECEEECCCCCEE WTELDDGDPATNPLVGLPASVELRMVMMGTADLQPMIQLDDKAISRVARNRSTMRAVSKS EEEECCCCCCCCCEEECCCCCEEEEEEECCCCCCHHEEECHHHHHHHHHCHHHHHHHHHH LPFGFPTTHVQTQYTLDSFDPVRHTFTPAIMVGDTVVSPDATVVTVDPQVPSRRTYLSTY CCCCCCCCCEEEEEECCCCCCHHHHCCCEEEECCEEECCCCEEEEECCCCCCCCEEEEEE TLGAAASAAASRS ECCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA