Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is baeB [H]
Identifier: 41410202
GI number: 41410202
Start: 4578890
End: 4579603
Strand: Reverse
Name: baeB [H]
Synonym: MAP4104c
Alternate gene names: 41410202
Gene position: 4579603-4578890 (Counterclockwise)
Preceding gene: 41410212
Following gene: 41410201
Centisome position: 94.82
GC content: 68.91
Gene sequence:
>714_bases GTGTCCGACGACCGGCTGTATTTCCGCCAACTGCTCTCCGGTCGCGACTTCGCCGCCGGCGACATGTTCGCGACGCAGAT GCGCAACTTCGCCTACCTGATCGGTGACCGGCAGACCGGGGACTGCGTGGTGGTCGACCCCGCCTACGCCGCCTCCGACC TGCTCGACACGCTCGAGGCCGACGGCATGCACCTGTCCGGCGTGCTGGTGACCCATCACCACCCCGACCACGTGGGCGGC TCGATGATGGGGTTCACGCTGGCGGGCCTGGCCGAACTGCTGGAGCGGGCGCCGGTGCCGGTGCACGTCAATAGCCATGA GGCGCTGTGGGTTTCGCGGGTCACCGGGATCAGCGCAAGCGACCTGACCGCCCACGAGAACCACGACAAGGTCAGCGCCG GCGACATCGAGATCGAGTTGCTGCACACCCCCGGTCACACGCCGGGCAGCCAGTGCTTCCTGCTGGACGGCCGGCTGGTC GCCGGGGACACGCTGTTCCTGGAGGGCTGCGGGCGCACCGACTTCCCCGGCGGCGACTCCGACGAGATGTACCGCAGCCT GCAGCGGCTGGCGAAGCTTCCCGGGGACCCGACGGTGTTTCCCGGGCACTGGTACTCGGCCGAGCCGAGCGCCTCGCTGT CGGAGGTGAAGCGGTCCAACTACGTCTACCGGGCCTCCGACCTTGACCAATGGCGGATGTTGATGGGCGGCTGA
Upstream 100 bases:
>100_bases CCGCCGAAGCCGTTGCTGGCAGGCCGTGTGCGGCAAAGTCCGGCCGGCCGAATCCGCAAGGGGTGGCGGGCCACCCGCGG CCGCGTCATAGTCTGGTCAG
Downstream 100 bases:
>100_bases GCCGTCCGGTGATCGCTCGATCGTGATCACCCCGCGGCCGGCCCTGTGATATAAGCGGAGGGTGGATTCCATGGGTTGGA TCCAGGACAGCTGGCATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSDDRLYFRQLLSGRDFAAGDMFATQMRNFAYLIGDRQTGDCVVVDPAYAASDLLDTLEADGMHLSGVLVTHHHPDHVGG SMMGFTLAGLAELLERAPVPVHVNSHEALWVSRVTGISASDLTAHENHDKVSAGDIEIELLHTPGHTPGSQCFLLDGRLV AGDTLFLEGCGRTDFPGGDSDEMYRSLQRLAKLPGDPTVFPGHWYSAEPSASLSEVKRSNYVYRASDLDQWRMLMGG
Sequences:
>Translated_237_residues MSDDRLYFRQLLSGRDFAAGDMFATQMRNFAYLIGDRQTGDCVVVDPAYAASDLLDTLEADGMHLSGVLVTHHHPDHVGG SMMGFTLAGLAELLERAPVPVHVNSHEALWVSRVTGISASDLTAHENHDKVSAGDIEIELLHTPGHTPGSQCFLLDGRLV AGDTLFLEGCGRTDFPGGDSDEMYRSLQRLAKLPGDPTVFPGHWYSAEPSASLSEVKRSNYVYRASDLDQWRMLMGG >Mature_236_residues SDDRLYFRQLLSGRDFAAGDMFATQMRNFAYLIGDRQTGDCVVVDPAYAASDLLDTLEADGMHLSGVLVTHHHPDHVGGS MMGFTLAGLAELLERAPVPVHVNSHEALWVSRVTGISASDLTAHENHDKVSAGDIEIELLHTPGHTPGSQCFLLDGRLVA GDTLFLEGCGRTDFPGGDSDEMYRSLQRLAKLPGDPTVFPGHWYSAEPSASLSEVKRSNYVYRASDLDQWRMLMGG
Specific function: Probably involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism [H]
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily [H]
Homologues:
Organism=Homo sapiens, GI41327741, Length=213, Percent_Identity=30.9859154929577, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI21703352, Length=192, Percent_Identity=35.4166666666667, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI116642887, Length=192, Percent_Identity=35.4166666666667, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI46361987, Length=183, Percent_Identity=31.1475409836066, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI14150041, Length=206, Percent_Identity=29.6116504854369, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787158, Length=194, Percent_Identity=32.9896907216495, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786406, Length=178, Percent_Identity=32.0224719101124, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538952, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320478, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=6e-14, Organism=Drosophila melanogaster, GI221330176, Length=210, Percent_Identity=29.0476190476191, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI21356335, Length=209, Percent_Identity=31.1004784688995, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24667703, Length=209, Percent_Identity=31.1004784688995, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24667711, Length=209, Percent_Identity=31.1004784688995, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 25862; Mature: 25731
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDRLYFRQLLSGRDFAAGDMFATQMRNFAYLIGDRQTGDCVVVDPAYAASDLLDTLEA CCCHHHHHHHHHCCCCCCCHHHHHHHHHCEEEEEECCCCCCEEEECCCHHHHHHHHHHHC DGMHLSGVLVTHHHPDHVGGSMMGFTLAGLAELLERAPVPVHVNSHEALWVSRVTGISAS CCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCC DLTAHENHDKVSAGDIEIELLHTPGHTPGSQCFLLDGRLVAGDTLFLEGCGRTDFPGGDS CCCCCCCCCCEECCCEEEEEEECCCCCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCH DEMYRSLQRLAKLPGDPTVFPGHWYSAEPSASLSEVKRSNYVYRASDLDQWRMLMGG HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHCC >Mature Secondary Structure SDDRLYFRQLLSGRDFAAGDMFATQMRNFAYLIGDRQTGDCVVVDPAYAASDLLDTLEA CCHHHHHHHHHCCCCCCCHHHHHHHHHCEEEEEECCCCCCEEEECCCHHHHHHHHHHHC DGMHLSGVLVTHHHPDHVGGSMMGFTLAGLAELLERAPVPVHVNSHEALWVSRVTGISAS CCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCC DLTAHENHDKVSAGDIEIELLHTPGHTPGSQCFLLDGRLVAGDTLFLEGCGRTDFPGGDS CCCCCCCCCCEECCCEEEEEEECCCCCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCH DEMYRSLQRLAKLPGDPTVFPGHWYSAEPSASLSEVKRSNYVYRASDLDQWRMLMGG HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA