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The map label for this gene is oppB

Identifier: 41408586

GI number: 41408586

Start: 2791560

End: 2792534

Strand: Direct

Name: oppB

Synonym: MAP2488

Alternate gene names: 41408586

Gene position: 2791560-2792534 (Clockwise)

Preceding gene: 41408584

Following gene: 41408587

Centisome position: 57.8

GC content: 69.64

Gene sequence:

>975_bases
ATGACTCGCTTTCTGGCGCGCCGGTTGCTCAACTACCTCGTCCTGCTGGCGCTGGCGTCGTTCCTGACGTTCTGCCTGAC
TTCGGTGGCGTTCAAGCCGCTGGACAGCCTGTTGCAGCGCAGCCCGCGGCCCCCGCAGGCCGTCATCGATGCGAAGGCCC
ACAGCCTGGGTCTGGACGAGCCGATCCCAATCCGCTACGCGCACTGGGCTTCACACGCGGTCCGCGGCGACTTCGGCAAG
ACCGTCACCGGGCAGCCGGTGGGCGCCTCGCTGGGGCGCCGCGTCGGAGTGACGCTGCGGCTGCTGGTGATTGGTTCGCT
GATCGGCACCGTCGCGGGGATCGCGGCCGGCGCGTGGGGCGCCATTCGGCAGTACCGCCTCAGCGACCGCGTGGTCACCA
TGCTGGCGCTGCTGGTGCTGAGCACCCCGACCTTCGTCATCGCCAGCCTGTTGATCCTCGCCGCGCTACGAGTCAACTGG
GCCCTGGGCGTACAGGTTTTCGACTACACCGGTGAGACGTCGCCGGGCGTGACCGGTGGGGCCGCCGCGCTAGTCGACCG
GCTGCGGCATCTGGTGCTGCCGTCGCTGACCCTGGCGCTGGCCGCCGCGGCGGGATACAGCCGCTATCAGCGCAACGCGA
TGCTCGACGTCCTCGGCCAGGATTTCATTCGCACCGCCCGCGCCAAGGGGCTCACCCGCCGGCGCGCGCTGGTCAAGCAC
GGCCTGCGCACCGCGCTGATCCCGCTGGCCACCCTGTTCGCCTACGGGGTGGCCGGTCTGGTCACCGGGGCGGTGTTCGT
GGAGAAGATCTTCGGCTGGCACGGCATGGGCGAATGGCTGGTGCAGGGCGTCGCGACGCAGGACACCAACATCGTCGCGG
CGATCACGCTGTTCTCCGGCGCGGTGGTGCTGCTGGCCGGTCTGCTCTCGGACGTGTTCTACGCCGCTCTTGATCCGCGG
GTCCGGGTGTCATGA

Upstream 100 bases:

>100_bases
TTAACAATCGGGTACCTGATTTTCACCGTTGGCAATCAGCACGATCGGAAGGTTCGCGTTCGTCTGGCTAACCTGTCCCA
ATGCGGCACTGTGGTGGGGC

Downstream 100 bases:

>100_bases
CCGCCCAGGCGAATGTCGATGGCGCTCACGGCTTTTCGGGCCACGAAGTGGCGGGCTTCGCCTCGCGGCGCACGCTCGTG
CTGCGCAGGTTCGGCCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDEPIPIRYAHWASHAVRGDFGK
TVTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWGAIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNW
ALGVQVFDYTGETSPGVTGGAAALVDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVKH
GLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFSGAVVLLAGLLSDVFYAALDPR
VRVS

Sequences:

>Translated_324_residues
MTRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDEPIPIRYAHWASHAVRGDFGK
TVTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWGAIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNW
ALGVQVFDYTGETSPGVTGGAAALVDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVKH
GLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFSGAVVLLAGLLSDVFYAALDPR
VRVS
>Mature_323_residues
TRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDEPIPIRYAHWASHAVRGDFGKT
VTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWGAIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNWA
LGVQVFDYTGETSPGVTGGAAALVDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVKHG
LRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFSGAVVLLAGLLSDVFYAALDPRV
RVS

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yliabcd; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=324, Percent_Identity=35.1851851851852, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1789965, Length=348, Percent_Identity=30.4597701149425, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=30.8868501529052, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789888, Length=325, Percent_Identity=29.2307692307692, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=27.1375464684015, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787761, Length=258, Percent_Identity=31.3953488372093, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=26.0714285714286, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34575; Mature: 34444

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
PIPIRYAHWASHAVRGDFGKTVTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWG
CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNWALGVQVFDYTGETSPGVTGG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCH
AAALVDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
AVVLLAGLLSDVFYAALDPRVRVS
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC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HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]