| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41407529
Identifier: 41407529
GI number: 41407529
Start: 1563523
End: 1564203
Strand: Direct
Name: 41407529
Synonym: MAP1431
Alternate gene names: NA
Gene position: 1563523-1564203 (Clockwise)
Preceding gene: 41407527
Following gene: 41407530
Centisome position: 32.37
GC content: 65.79
Gene sequence:
>681_bases ATGGCCTCCGAAACGGACCCTGCCAGCCAGAAGCCGGCGCTGGCCGCCACCAGCTGGGCGCTGCTGGGCATGATGTCCTA CGAGGAGGAGGTCTCGGGCTACGACCTCAAGAAGTGGATCGACTGGAGTGTCGACCTGTACTACTGGAGCCCGTCCTACA GCCAGATCTACACCGAGCTGAAGAAGCTGGAGGCGCTCGGGCTGGTGACGTCGCGCGTCGAACGCGACGAGGGCACCCGC AGCCGCCGGCTCTACAAGATCACCCCGGCCGGCATGGACGCTGTCACGCAGTGGACCAACCATGCACCCGTCGACCCGCC GGTGCTCAAACACAGTGTGCTGCTTCGGGTTACGTTCGGGCACCTGAGTAATCCCGGTCGGCTCAAGGAATTGCTGCAGG AGCACGTGGCCTACGCCGAGGCCCGGCACCGCAAGGCCATGGAGGACGCCGAGGGAGCCGAGGCGGAGCCCGCGTGGGCG TATTCAGTGCTCGCATTGCGCTGGGCGGCAAAGTATTACGCCGCCGAGCGGGAGTTCGCGCTGGAGATGATCAAGGAGAT CGACGAGGTCGACGCCATCCTGCAGCGCACCGCAAAGGGTGGGTACGGTAAGCCCCGGCCCACGCCGGGTTACTGGCGTG AGGTCGAGAAGCAGGTCCAGGCGAAGCGCGAGGCGGAGTAA
Upstream 100 bases:
>100_bases GAGGCGCATCAGGTGCGGAACGGGAAAGGCGAATTTCACGGGCGTCCCAGCCAGCGGTCCATGACCCCCAATCTAGGGGC GGTGTTGTTAACCTGGCGAC
Downstream 100 bases:
>100_bases TACTCGCCTTTCCGGATATCAAAAACGCATAGCGAAATCCCTTGTGTCACTTTGGTTTCTGTGGTCACATTGCCGGGTTT TTTGTCGGTGCCCCCGGATA
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator PadR-Like Family; PadR-Like Family Transcriptional Regulator; Transcriptional Regulator PadR Family Protein; Padr Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator PadR Family
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MASETDPASQKPALAATSWALLGMMSYEEEVSGYDLKKWIDWSVDLYYWSPSYSQIYTELKKLEALGLVTSRVERDEGTR SRRLYKITPAGMDAVTQWTNHAPVDPPVLKHSVLLRVTFGHLSNPGRLKELLQEHVAYAEARHRKAMEDAEGAEAEPAWA YSVLALRWAAKYYAAEREFALEMIKEIDEVDAILQRTAKGGYGKPRPTPGYWREVEKQVQAKREAE
Sequences:
>Translated_226_residues MASETDPASQKPALAATSWALLGMMSYEEEVSGYDLKKWIDWSVDLYYWSPSYSQIYTELKKLEALGLVTSRVERDEGTR SRRLYKITPAGMDAVTQWTNHAPVDPPVLKHSVLLRVTFGHLSNPGRLKELLQEHVAYAEARHRKAMEDAEGAEAEPAWA YSVLALRWAAKYYAAEREFALEMIKEIDEVDAILQRTAKGGYGKPRPTPGYWREVEKQVQAKREAE >Mature_225_residues ASETDPASQKPALAATSWALLGMMSYEEEVSGYDLKKWIDWSVDLYYWSPSYSQIYTELKKLEALGLVTSRVERDEGTRS RRLYKITPAGMDAVTQWTNHAPVDPPVLKHSVLLRVTFGHLSNPGRLKELLQEHVAYAEARHRKAMEDAEGAEAEPAWAY SVLALRWAAKYYAAEREFALEMIKEIDEVDAILQRTAKGGYGKPRPTPGYWREVEKQVQAKREAE
Specific function: Unknown
COG id: COG1695
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25722; Mature: 25591
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASETDPASQKPALAATSWALLGMMSYEEEVSGYDLKKWIDWSVDLYYWSPSYSQIYTEL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEEECCCHHHHHHHH KKLEALGLVTSRVERDEGTRSRRLYKITPAGMDAVTQWTNHAPVDPPVLKHSVLLRVTFG HHHHHHHHHHHHHHHCCCHHHCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHEEECCC HLSNPGRLKELLQEHVAYAEARHRKAMEDAEGAEAEPAWAYSVLALRWAAKYYAAEREFA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LEMIKEIDEVDAILQRTAKGGYGKPRPTPGYWREVEKQVQAKREAE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure ASETDPASQKPALAATSWALLGMMSYEEEVSGYDLKKWIDWSVDLYYWSPSYSQIYTEL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEEECCCHHHHHHHH KKLEALGLVTSRVERDEGTRSRRLYKITPAGMDAVTQWTNHAPVDPPVLKHSVLLRVTFG HHHHHHHHHHHHHHHCCCHHHCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHEEECCC HLSNPGRLKELLQEHVAYAEARHRKAMEDAEGAEAEPAWAYSVLALRWAAKYYAAEREFA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LEMIKEIDEVDAILQRTAKGGYGKPRPTPGYWREVEKQVQAKREAE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA