| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41407530
Identifier: 41407530
GI number: 41407530
Start: 1564255
End: 1565745
Strand: Direct
Name: 41407530
Synonym: MAP1432
Alternate gene names: NA
Gene position: 1564255-1565745 (Clockwise)
Preceding gene: 41407529
Following gene: 41407532
Centisome position: 32.39
GC content: 68.08
Gene sequence:
>1491_bases TTGGTTTCTGTGGTCACATTGCCGGGTTTTTTGTCGGTGCCCCCGGATAGTTTGCGAGGTATGAGTAGTGATCGGGGGGC GGTGTCGGCGGCGTTCGACGTCATCGATGCTGCCTTGGACGATCTGCTCGACTGCGACTACGTCGCGTTGGCCACGCGTG AGAAGTTGGCGTTGCTGACCCGCTGCGAACGGCTGCGCCGGCGGCTGCCGGCGGTCGAGCATCCGCTGATCAACGCGCTG GCCCGCGACGCCAGCCCGGCGGAGTTGGGTGGCCGGCTTTCGCATGCGATCGCCGAGGCGACGCTGATCAGCCGCGCCGA GGCCGCCCGGCGGGTGCACACCGCCGCTGATTTGGGCCCCCGCGTCGGGCTGACCGGCGAACCGTTGCCTCCGCTGCTGG CCGCCACTGCGGCCGCGCAACGGGCCGGGTTGTTGGGTCTCGAGCAGGTGGCGGTGATCCGTAAGTTCTGCCACCAGTTG CCGGGCTGGATCGACCAGGCGACGCGGGAGCGCGCCGAAACCGACCTCGCCAACCAGGGTGGGCAGTATCGTCCCGAACA GCTCGCCGCGTTGGCGGGCACGCTGGCCGATTGCCTCAACCCCGACGGCCTCTACCGCGACGAGGACCGCGCCCGCCGCC GCAGCCTCACCCTGGGCAACCAACAGGCCGACGGCATGTCCGAACTCCGCGGCTGGCTATCCCCCGAGCTGCGCGCCACC CTGGAAGCGGTGCTGGCCAAACTCGCCGCCCCCGGCATGTGCAACTCACTCGATGAGAGTCCGTGCGTGGAAGGCACTCC GAGTCAACACGCCATCGACGGTGATGCCCGCTCGGCGGCCCAGCGCAATCACGATGGGCTGCTGGCCGGGCTGCGCGCCC TGCTGGCCTCAGGAAACCTCGGCCAACACAACGGGCTCCCGGCCTCCATCATCGTCACCACCACCCTGGCCGACCTCGAA ACCGCCGCCGGACGGCGTCTGACCGGCGGCGGCACCCTGCTACCCATGTCCGATGTGATCCGGCTATCCCGGCACGCCCA CCACTACCTGGCCATCTTCGACCAGGGCAAAGCCCTGGCCCTCCTGTATCACACCAAACGCCTGGCCTCACCCGCACAGC GCATCGTGTTATACGCCAAAGACCGCGGCTGCACCGCACCCGGCTGCACCGCCCCCGGCTGCACCGCCCCCGGCTGCACC GTCCCCGGCTACTACAGCGAAGTGCATCACTGCACCGACTACGCCACCTGCCACACCACCGACATCAACGATCTGACCTT CGCCTGCGGACCCCACCACCGCCTGCTACAACCCGGCGCCTGGACCACCCACAAAAACGCCAAAGGGGAAACCGAATGGA TTCCACCACCCCACCTGGACCGAAACCAACCCCGCACCAACACCTTCCACCACCCCGAAAAACTCCTCCGCGGGGAGAAC GACGACGGGGAAGACGAGGACGAAGACGAGGACAGCGACGACGCCGGTTAG
Upstream 100 bases:
>100_bases CTGGCGTGAGGTCGAGAAGCAGGTCCAGGCGAAGCGCGAGGCGGAGTAATACTCGCCTTTCCGGATATCAAAAACGCATA GCGAAATCCCTTGTGTCACT
Downstream 100 bases:
>100_bases TCGGGCTGCGAGGCGCTCGGGCGCGCCGCCTCCTGAGCGGCGCTCGGGCGCGCCGCCTCTTGGGCGGCGATGTAGCCGTA CACCAGCCCCTGCGCGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MVSVVTLPGFLSVPPDSLRGMSSDRGAVSAAFDVIDAALDDLLDCDYVALATREKLALLTRCERLRRRLPAVEHPLINAL ARDASPAELGGRLSHAIAEATLISRAEAARRVHTAADLGPRVGLTGEPLPPLLAATAAAQRAGLLGLEQVAVIRKFCHQL PGWIDQATRERAETDLANQGGQYRPEQLAALAGTLADCLNPDGLYRDEDRARRRSLTLGNQQADGMSELRGWLSPELRAT LEAVLAKLAAPGMCNSLDESPCVEGTPSQHAIDGDARSAAQRNHDGLLAGLRALLASGNLGQHNGLPASIIVTTTLADLE TAAGRRLTGGGTLLPMSDVIRLSRHAHHYLAIFDQGKALALLYHTKRLASPAQRIVLYAKDRGCTAPGCTAPGCTAPGCT VPGYYSEVHHCTDYATCHTTDINDLTFACGPHHRLLQPGAWTTHKNAKGETEWIPPPHLDRNQPRTNTFHHPEKLLRGEN DDGEDEDEDEDSDDAG
Sequences:
>Translated_496_residues MVSVVTLPGFLSVPPDSLRGMSSDRGAVSAAFDVIDAALDDLLDCDYVALATREKLALLTRCERLRRRLPAVEHPLINAL ARDASPAELGGRLSHAIAEATLISRAEAARRVHTAADLGPRVGLTGEPLPPLLAATAAAQRAGLLGLEQVAVIRKFCHQL PGWIDQATRERAETDLANQGGQYRPEQLAALAGTLADCLNPDGLYRDEDRARRRSLTLGNQQADGMSELRGWLSPELRAT LEAVLAKLAAPGMCNSLDESPCVEGTPSQHAIDGDARSAAQRNHDGLLAGLRALLASGNLGQHNGLPASIIVTTTLADLE TAAGRRLTGGGTLLPMSDVIRLSRHAHHYLAIFDQGKALALLYHTKRLASPAQRIVLYAKDRGCTAPGCTAPGCTAPGCT VPGYYSEVHHCTDYATCHTTDINDLTFACGPHHRLLQPGAWTTHKNAKGETEWIPPPHLDRNQPRTNTFHHPEKLLRGEN DDGEDEDEDEDSDDAG >Mature_496_residues MVSVVTLPGFLSVPPDSLRGMSSDRGAVSAAFDVIDAALDDLLDCDYVALATREKLALLTRCERLRRRLPAVEHPLINAL ARDASPAELGGRLSHAIAEATLISRAEAARRVHTAADLGPRVGLTGEPLPPLLAATAAAQRAGLLGLEQVAVIRKFCHQL PGWIDQATRERAETDLANQGGQYRPEQLAALAGTLADCLNPDGLYRDEDRARRRSLTLGNQQADGMSELRGWLSPELRAT LEAVLAKLAAPGMCNSLDESPCVEGTPSQHAIDGDARSAAQRNHDGLLAGLRALLASGNLGQHNGLPASIIVTTTLADLE TAAGRRLTGGGTLLPMSDVIRLSRHAHHYLAIFDQGKALALLYHTKRLASPAQRIVLYAKDRGCTAPGCTAPGCTAPGCT VPGYYSEVHHCTDYATCHTTDINDLTFACGPHHRLLQPGAWTTHKNAKGETEWIPPPHLDRNQPRTNTFHHPEKLLRGEN DDGEDEDEDEDSDDAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rv1128c/1148c/1588c/1702c/1945/3466 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003870 - InterPro: IPR003615 [H]
Pfam domain/function: PF02720 DUF222 [H]
EC number: NA
Molecular weight: Translated: 53150; Mature: 53150
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVVTLPGFLSVPPDSLRGMSSDRGAVSAAFDVIDAALDDLLDCDYVALATREKLALLT CCEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RCERLRRRLPAVEHPLINALARDASPAELGGRLSHAIAEATLISRAEAARRVHTAADLGP HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RVGLTGEPLPPLLAATAAAQRAGLLGLEQVAVIRKFCHQLPGWIDQATRERAETDLANQG CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC GQYRPEQLAALAGTLADCLNPDGLYRDEDRARRRSLTLGNQQADGMSELRGWLSPELRAT CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHH LEAVLAKLAAPGMCNSLDESPCVEGTPSQHAIDGDARSAAQRNHDGLLAGLRALLASGNL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC GQHNGLPASIIVTTTLADLETAAGRRLTGGGTLLPMSDVIRLSRHAHHYLAIFDQGKALA CCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCEEE LLYHTKRLASPAQRIVLYAKDRGCTAPGCTAPGCTAPGCTVPGYYSEVHHCTDYATCHTT EEHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECC DINDLTFACGPHHRLLQPGAWTTHKNAKGETEWIPPPHLDRNQPRTNTFHHPEKLLRGEN CCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC DDGEDEDEDEDSDDAG CCCCCCCCCCCCCCCC >Mature Secondary Structure MVSVVTLPGFLSVPPDSLRGMSSDRGAVSAAFDVIDAALDDLLDCDYVALATREKLALLT CCEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RCERLRRRLPAVEHPLINALARDASPAELGGRLSHAIAEATLISRAEAARRVHTAADLGP HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RVGLTGEPLPPLLAATAAAQRAGLLGLEQVAVIRKFCHQLPGWIDQATRERAETDLANQG CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC GQYRPEQLAALAGTLADCLNPDGLYRDEDRARRRSLTLGNQQADGMSELRGWLSPELRAT CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHH LEAVLAKLAAPGMCNSLDESPCVEGTPSQHAIDGDARSAAQRNHDGLLAGLRALLASGNL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC GQHNGLPASIIVTTTLADLETAAGRRLTGGGTLLPMSDVIRLSRHAHHYLAIFDQGKALA CCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCEEE LLYHTKRLASPAQRIVLYAKDRGCTAPGCTAPGCTAPGCTVPGYYSEVHHCTDYATCHTT EEHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECC DINDLTFACGPHHRLLQPGAWTTHKNAKGETEWIPPPHLDRNQPRTNTFHHPEKLLRGEN CCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC DDGEDEDEDEDSDDAG CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]