Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is 39997400
Identifier: 39997400
GI number: 39997400
Start: 2520625
End: 2521413
Strand: Direct
Name: 39997400
Synonym: GSU2302
Alternate gene names: NA
Gene position: 2520625-2521413 (Clockwise)
Preceding gene: 39997399
Following gene: 39997401
Centisome position: 66.09
GC content: 64.39
Gene sequence:
>789_bases ATGCTTACTACAGATTCCCTTAAACGTCTCTGGATTTTCTCTTTCGACCGGACGCTCACCGCTGCCGGGGCCTGCTACTC AAAGGCACGCCTGCACCGGGTGACACGCCAGTTTCTGGAAGAACTCGCCGCGCTTCCCGGCCACCGGGTTGCCGTTCTGT CCAGCCGTCCCCTTGACGATCTCGTTTCCCGCGTGCCGATCGAGGGCATTTACCTCGGCGGCAGCTGCGGAACCGAATGG CACATACCCGGCGGTGAATCAATGACCCTTTCGGGCAAGCCCAAGGACATGCTGATGGAAACCCGCGATGCCCTGTTGCC GACACTGCGGGAAGTCGCCGACCTGCCGGGCGTGGAACTGGAGGACCGGCGCTGGTCCGCGGCACTCCACACGCAGGAGG CAAACACCAAGGCACGCCAGACGCTCTTCGCCCGGCTCGCTGCCGTTCTTAAGGGGTGGAGAGTGGCCCTTTACCGGAAT ACCACCATGGTGGAGATCCAGTTTCTTCCCGAGATCACCATGGCATTCGGCGCTCAGGCACTGTGCCGGTTCCTGGGATA TCGCGGAGACGTGGTCTGCGCCGGCAGTGACGAGAACGATGCCACGGCACTGCGCTGGGCCCTCAATCAGGGGGGAACGG CGCTCAGCCTCGGCAGGGACCCGCTCGTGCCGGGGGCGCGGCCGGTAGTGGACGTGAGGTCCCTGGCCCGTCACGTTCGC GACCTGGCGGGAATCGACGAGCACCATCGGACGAGAATGGCGGGGCGCAGGCTCTGCAATGCCGCATAG
Upstream 100 bases:
>100_bases CAACCGATAGTGCGCTCGGCCGTTCTTTATCATTAATTTCGGCCGCAACAGCATTCCGGGAAACCGTCCGCCGCGGTCCC GGGACAACGGAGGTGCAACG
Downstream 100 bases:
>100_bases CAGTCGTGCATGGCTGACTGAAAGGATAGGATTTGAGAAAAAGGATCAACCTGCTGCGTGAATTTTCGGTGCCTCTGATC GCCGGTGTCGTGGTGGCCCT
Product: trehalose-phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MLTTDSLKRLWIFSFDRTLTAAGACYSKARLHRVTRQFLEELAALPGHRVAVLSSRPLDDLVSRVPIEGIYLGGSCGTEW HIPGGESMTLSGKPKDMLMETRDALLPTLREVADLPGVELEDRRWSAALHTQEANTKARQTLFARLAAVLKGWRVALYRN TTMVEIQFLPEITMAFGAQALCRFLGYRGDVVCAGSDENDATALRWALNQGGTALSLGRDPLVPGARPVVDVRSLARHVR DLAGIDEHHRTRMAGRRLCNAA
Sequences:
>Translated_262_residues MLTTDSLKRLWIFSFDRTLTAAGACYSKARLHRVTRQFLEELAALPGHRVAVLSSRPLDDLVSRVPIEGIYLGGSCGTEW HIPGGESMTLSGKPKDMLMETRDALLPTLREVADLPGVELEDRRWSAALHTQEANTKARQTLFARLAAVLKGWRVALYRN TTMVEIQFLPEITMAFGAQALCRFLGYRGDVVCAGSDENDATALRWALNQGGTALSLGRDPLVPGARPVVDVRSLARHVR DLAGIDEHHRTRMAGRRLCNAA >Mature_262_residues MLTTDSLKRLWIFSFDRTLTAAGACYSKARLHRVTRQFLEELAALPGHRVAVLSSRPLDDLVSRVPIEGIYLGGSCGTEW HIPGGESMTLSGKPKDMLMETRDALLPTLREVADLPGVELEDRRWSAALHTQEANTKARQTLFARLAAVLKGWRVALYRN TTMVEIQFLPEITMAFGAQALCRFLGYRGDVVCAGSDENDATALRWALNQGGTALSLGRDPLVPGARPVVDVRSLARHVR DLAGIDEHHRTRMAGRRLCNAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28902; Mature: 28902
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTTDSLKRLWIFSFDRTLTAAGACYSKARLHRVTRQFLEELAALPGHRVAVLSSRPLDD CCCCHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH LVSRVPIEGIYLGGSCGTEWHIPGGESMTLSGKPKDMLMETRDALLPTLREVADLPGVEL HHHHCCCCEEEECCCCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC EDRRWSAALHTQEANTKARQTLFARLAAVLKGWRVALYRNTTMVEIQFLPEITMAFGAQA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEEECCHHHHHHHHHH LCRFLGYRGDVVCAGSDENDATALRWALNQGGTALSLGRDPLVPGARPVVDVRSLARHVR HHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH DLAGIDEHHRTRMAGRRLCNAA HHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTTDSLKRLWIFSFDRTLTAAGACYSKARLHRVTRQFLEELAALPGHRVAVLSSRPLDD CCCCHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH LVSRVPIEGIYLGGSCGTEWHIPGGESMTLSGKPKDMLMETRDALLPTLREVADLPGVEL HHHHCCCCEEEECCCCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC EDRRWSAALHTQEANTKARQTLFARLAAVLKGWRVALYRNTTMVEIQFLPEITMAFGAQA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEEECCHHHHHHHHHH LCRFLGYRGDVVCAGSDENDATALRWALNQGGTALSLGRDPLVPGARPVVDVRSLARHVR HHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH DLAGIDEHHRTRMAGRRLCNAA HHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA