| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is nrfA [H]
Identifier: 39995465
GI number: 39995465
Start: 387351
End: 388952
Strand: Reverse
Name: nrfA [H]
Synonym: GSU0357
Alternate gene names: 39995465
Gene position: 388952-387351 (Counterclockwise)
Preceding gene: 39995466
Following gene: 39995446
Centisome position: 10.2
GC content: 59.8
Gene sequence:
>1602_bases ATGTGGAAGAAACGACTGGCTGTACTGGCGGTGGCCGCGGGAGCGGCAGTTGCCCTGTCGATCCCGGCACTCTCCACGGC GGCAAAGGGCAAGCCTGCTGCCACGGGTGCCAAGGGTGACGGACGGGAGACATGCTACGGCTGTCACGAGGAGGTCAAGG CCCTCAAGGAAGGATCAAAGCACGCCCGTCTTGCCTGCGATTCCTGCCACGACAAACTCAAGGAGCACCTGGCCAACTAC GAGACCAAGCCGGGCACCAATCTGGATCCGGCCAAGTGCGGTTCGTGCCACAAAAATGAATACAGCAGTTTCTTCACGGT CAACTACGACGCCCAACCGCGCAAGGAGAAAGGGATTCCCACCGGGCGCTCCCCCATGCAGGACAAGCTCCTGGCCGGCC ACGGTTTCACCTTCGAGCACAACGAACCCCGGGGACACGCCTTCATGGTGGTTGACCAATTCATCGTCGACCGTTTCCAG GGAGGGCGTTTTCAGTACAAGAAGGGCGCCTGGGGAATGGACGCCACCGGCAAGGCATGGGACATCCTGACCGACACGGG CAAGAAGCTACCGGAAACGGCCATGGCGGGAAATCCCACCTGTATCCAGTGCAAGACGTCCGATCACATCCTCAAATGGA AGTTTATGGGGGACAAGGACCCCAAGGCCACGTGGGACCGGAGTTCCGACATCGTTGCAGTGGCCAAGGACACCCAGAAT CCGGTGGGGTGCATCCACTGTCACGACCCCCATGGCACCCAACCCCGCGTGGTGCGTGACGGCCTGATCCAGGCAATTGA GAAGGACCCGACCGCCAATATTTTCGCCAAGAACGGCAAGACCGACCTGAAAGTTATCTCTTTCCGCGACGGTTTCCGCA AGATCGGCGTCATGGAAAAGACCGATTCCCGGCTCATGTGCGCCCAGTGCCACGTTGAGTACAACTGCAACGCGGGCTCC CAGTGGTCAGACGGCCAGAAAGTGGGCTACGACGACCAGCGCACCAACCACTTCCCCCTCAAAAATGCAAAGGATCTCCT CGCACACTACAAGAAGCTCGATTTCTACGATTTCAAGCACGCGATCACAGGGGCACGCCTCGTCAAGCTGCAGCACCCGG AAGCCGAAACCTACGCGGGCAGTGTCCATGACCGGGCCGGCGTCGGCTGCGCCGACTGCCACATGCCGCGCATGAAGGGC AAAGACGGCAAGATGTTTAAATCCCACGGCGTGATTCGTCCCGCTCACCATGTGAAAGAAGCCTGTCTCGGCTGCCATCC CAAGAGCACCGTGGAGCAGAAGTCCTACCAGATCGAGGGAACCCGTAACTACATCCGCGGCAAGATGCGCAAGGCGGAAT ACTGGCTCGGCCAACTGATCGACACCTACGCCGCCGCCAAGCGGATGGGAATCGGTGAAGATGTCCTGGCCAAGGCACGG GAGAAGCATGAGGAAGCCCATGTACTGTGGGAGTACTGGACCGCTGAAAACAGCGACGGTTTCCACAATCCCGAACTGGC CCGCGACAGCCTGACCTCCTCCATCGCGGCATCCAAGGCAGGGGTTAAGCTCCTGAACGACGCCATGGAACCCAAGAAGT AA
Upstream 100 bases:
>100_bases GCGGCGGCTGCAGACATGTCTGCCCGGCAAAGCCGAACGCGATGAGTATTGAGCCGTTGAACGGCTAGCCGTAACCTATC ACGAAAGGAGAAATCAACGT
Downstream 100 bases:
>100_bases CCATTTTCTTCCCGTTGTCCTCCGGCAGAAGGCCCGGTCTGCTCCCGCAGTCCGGGCTTTCTGCCGGAACAGGCCATTTG TCTCATGCATCGCAACAGCA
Product: cytochrome C
Products: NA
Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MWKKRLAVLAVAAGAAVALSIPALSTAAKGKPAATGAKGDGRETCYGCHEEVKALKEGSKHARLACDSCHDKLKEHLANY ETKPGTNLDPAKCGSCHKNEYSSFFTVNYDAQPRKEKGIPTGRSPMQDKLLAGHGFTFEHNEPRGHAFMVVDQFIVDRFQ GGRFQYKKGAWGMDATGKAWDILTDTGKKLPETAMAGNPTCIQCKTSDHILKWKFMGDKDPKATWDRSSDIVAVAKDTQN PVGCIHCHDPHGTQPRVVRDGLIQAIEKDPTANIFAKNGKTDLKVISFRDGFRKIGVMEKTDSRLMCAQCHVEYNCNAGS QWSDGQKVGYDDQRTNHFPLKNAKDLLAHYKKLDFYDFKHAITGARLVKLQHPEAETYAGSVHDRAGVGCADCHMPRMKG KDGKMFKSHGVIRPAHHVKEACLGCHPKSTVEQKSYQIEGTRNYIRGKMRKAEYWLGQLIDTYAAAKRMGIGEDVLAKAR EKHEEAHVLWEYWTAENSDGFHNPELARDSLTSSIAASKAGVKLLNDAMEPKK
Sequences:
>Translated_533_residues MWKKRLAVLAVAAGAAVALSIPALSTAAKGKPAATGAKGDGRETCYGCHEEVKALKEGSKHARLACDSCHDKLKEHLANY ETKPGTNLDPAKCGSCHKNEYSSFFTVNYDAQPRKEKGIPTGRSPMQDKLLAGHGFTFEHNEPRGHAFMVVDQFIVDRFQ GGRFQYKKGAWGMDATGKAWDILTDTGKKLPETAMAGNPTCIQCKTSDHILKWKFMGDKDPKATWDRSSDIVAVAKDTQN PVGCIHCHDPHGTQPRVVRDGLIQAIEKDPTANIFAKNGKTDLKVISFRDGFRKIGVMEKTDSRLMCAQCHVEYNCNAGS QWSDGQKVGYDDQRTNHFPLKNAKDLLAHYKKLDFYDFKHAITGARLVKLQHPEAETYAGSVHDRAGVGCADCHMPRMKG KDGKMFKSHGVIRPAHHVKEACLGCHPKSTVEQKSYQIEGTRNYIRGKMRKAEYWLGQLIDTYAAAKRMGIGEDVLAKAR EKHEEAHVLWEYWTAENSDGFHNPELARDSLTSSIAASKAGVKLLNDAMEPKK >Mature_533_residues MWKKRLAVLAVAAGAAVALSIPALSTAAKGKPAATGAKGDGRETCYGCHEEVKALKEGSKHARLACDSCHDKLKEHLANY ETKPGTNLDPAKCGSCHKNEYSSFFTVNYDAQPRKEKGIPTGRSPMQDKLLAGHGFTFEHNEPRGHAFMVVDQFIVDRFQ GGRFQYKKGAWGMDATGKAWDILTDTGKKLPETAMAGNPTCIQCKTSDHILKWKFMGDKDPKATWDRSSDIVAVAKDTQN PVGCIHCHDPHGTQPRVVRDGLIQAIEKDPTANIFAKNGKTDLKVISFRDGFRKIGVMEKTDSRLMCAQCHVEYNCNAGS QWSDGQKVGYDDQRTNHFPLKNAKDLLAHYKKLDFYDFKHAITGARLVKLQHPEAETYAGSVHDRAGVGCADCHMPRMKG KDGKMFKSHGVIRPAHHVKEACLGCHPKSTVEQKSYQIEGTRNYIRGKMRKAEYWLGQLIDTYAAAKRMGIGEDVLAKAR EKHEEAHVLWEYWTAENSDGFHNPELARDSLTSSIAASKAGVKLLNDAMEPKK
Specific function: Plays a role in nitrite reduction [H]
COG id: COG3303
COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c-552 family [H]
Homologues:
Organism=Escherichia coli, GI1790506, Length=415, Percent_Identity=23.1325301204819, Blast_Score=99, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003321 - InterPro: IPR017570 - InterPro: IPR011031 [H]
Pfam domain/function: PF02335 Cytochrom_C552 [H]
EC number: =1.7.2.2 [H]
Molecular weight: Translated: 59069; Mature: 59069
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKKRLAVLAVAAGAAVALSIPALSTAAKGKPAATGAKGDGRETCYGCHEEVKALKEGSK CCHHHEEHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC HARLACDSCHDKLKEHLANYETKPGTNLDPAKCGSCHKNEYSSFFTVNYDAQPRKEKGIP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHCCCC TGRSPMQDKLLAGHGFTFEHNEPRGHAFMVVDQFIVDRFQGGRFQYKKGAWGMDATGKAW CCCCCHHHHHHHCCCCEECCCCCCCCEEEEHHHHHHHHHCCCCEEECCCCCCCCCCCCEE DILTDTGKKLPETAMAGNPTCIQCKTSDHILKWKFMGDKDPKATWDRSSDIVAVAKDTQN EEEHHCCCCCCCHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCC PVGCIHCHDPHGTQPRVVRDGLIQAIEKDPTANIFAKNGKTDLKVISFRDGFRKIGVMEK CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCHHHCCCEEC TDSRLMCAQCHVEYNCNAGSQWSDGQKVGYDDQRTNHFPLKNAKDLLAHYKKLDFYDFKH CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH AITGARLVKLQHPEAETYAGSVHDRAGVGCADCHMPRMKGKDGKMFKSHGVIRPAHHVKE HHCCEEEEEEECCCCHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHH ACLGCHPKSTVEQKSYQIEGTRNYIRGKMRKAEYWLGQLIDTYAAAKRMGIGEDVLAKAR HHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH EKHEEAHVLWEYWTAENSDGFHNPELARDSLTSSIAASKAGVKLLNDAMEPKK HHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MWKKRLAVLAVAAGAAVALSIPALSTAAKGKPAATGAKGDGRETCYGCHEEVKALKEGSK CCHHHEEHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC HARLACDSCHDKLKEHLANYETKPGTNLDPAKCGSCHKNEYSSFFTVNYDAQPRKEKGIP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHCCCC TGRSPMQDKLLAGHGFTFEHNEPRGHAFMVVDQFIVDRFQGGRFQYKKGAWGMDATGKAW CCCCCHHHHHHHCCCCEECCCCCCCCEEEEHHHHHHHHHCCCCEEECCCCCCCCCCCCEE DILTDTGKKLPETAMAGNPTCIQCKTSDHILKWKFMGDKDPKATWDRSSDIVAVAKDTQN EEEHHCCCCCCCHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCC PVGCIHCHDPHGTQPRVVRDGLIQAIEKDPTANIFAKNGKTDLKVISFRDGFRKIGVMEK CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCHHHCCCEEC TDSRLMCAQCHVEYNCNAGSQWSDGQKVGYDDQRTNHFPLKNAKDLLAHYKKLDFYDFKH CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH AITGARLVKLQHPEAETYAGSVHDRAGVGCADCHMPRMKGKDGKMFKSHGVIRPAHHVKE HHCCEEEEEEECCCCHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHH ACLGCHPKSTVEQKSYQIEGTRNYIRGKMRKAEYWLGQLIDTYAAAKRMGIGEDVLAKAR HHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH EKHEEAHVLWEYWTAENSDGFHNPELARDSLTSSIAASKAGVKLLNDAMEPKK HHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA